CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.12066.1.S1_s_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.12066.1.S1_s_at BQ171512 - - 5e-6 At4g24160 hydrolase, alpha/beta fold family protein S.X. H.G.
0.36 51.9 Ta.22677.1.S1_at CA686817 Leucine-rich repeat protein - 2e-4 At5g21090 leucine-rich repeat protein, putative S.X. H.G.
0.33 46.9 Ta.9621.1.A1_at CK212588 - - 5e-9 At2g01220 nucleotidyltransferase S.X. H.G.
0.33 46.9 Ta.6595.1.S1_at CA680476 - - 2e+0 At5g23035 - S.X. H.G.
0.31 42.7 Ta.23257.1.S1_s_at BT009086.1 - - 3e-16 At2g18730 diacylglycerol kinase, putative S.X. H.G.
0.21 25.5 Ta.3239.2.A1_a_at CA641606 - - 4e+0 At4g09775 - S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 97.8 GSM250903 TcLr1_7dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM143508 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.1 97.5 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0 97.4 GSM143509 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.9 97.3 GSM250886 TcLr1_3dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7 97.1 GSM143511 Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6 97.0 GSM250901 Tc_7dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250883 Tc_3dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4 96.8 GSM250918 TcLr34_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3 96.7 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.79 0 769 Ta.5982.1.S1_at BJ293272 - - 9e-5 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.40 1e-83 309 Ta.26236.1.A1_at CD453043 - - 6e-10 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.27 4e-25 115 TaAffx.58655.1.S1_x_at CA617528 - - 4e-2 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 3e-1 36 Ta.4686.1.S1_at CK151514 - - 2e-1 At1g48980 oxidoreductase C.G. S.X.
0.04 1e+0 34 Ta.22504.2.A1_at CA681655 - - 1e+0 At5g62165 AGL42 (AGAMOUS LIKE 42) C.G. S.X.
0.03 5e+0 32 TaAffx.57544.1.S1_at CA627264 - - 4e+0 At3g21890 zinc finger (B-box type) family protein C.G. S.X.
0.03 5e+0 32 TaAffx.30786.1.S1_at CA622059 - - 4e+0 At5g65810 unknown protein C.G. S.X.
0.02 5e+0 32 TaAffx.113733.2.S1_at CA606161 - - 2e-2 At1g30360 ERD4 (early-responsive to dehydration 4) C.G. S.X.
0.03 5e+0 32 TaAffx.111426.1.S1_at CA640986 - - 4e+0 At4g31310 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 5e-6 52 Arabidopsis thaliana At4g24160 828516 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA - - - C.G. S.X.
0.29 1e-28 127 Glycine max GmaAffx.90936.1.A1_s_at CF806661 - - 1e-16 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.56 0 670 Hordeum vulgare Contig12512_at Contig12512 - - 4e-20 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.23 2e-34 147 Oryza sativa Os09g0520200 9637.m02967 - Alpha/beta hydrolase family protein 2e-37 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.15 5e-22 105 Populus trichocarpa PtpAffx.93473.1.A1_at BP936789 hypothetical protein - 2e-30 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.32 6e-15 79 Vitis vinifera 1615803_s_at CB983064 hypothetical protein LOC100267776 - 1e-16 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
0.22 2e-80 297 Zea mays Zm.10271.1.S1_at CA452443 abhydrolase domain-containing protein 5 - 9e-35 At4g24160 hydrolase, alpha/beta fold family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage