Gene omics information

Query gene ID	Ta.11921.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	81.0	Ta.11921.1.S1_at	CA722130	-	-	6e-1	At2g45380	-	S.X.	H.G.	Please select
0.82	92.7	Ta.25563.1.S1_at	CD454106	-	-	3e-12	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	S.X.	H.G.	Please select
0.73	89.1	Ta.12561.3.S1_x_at	BQ169774	-	-	3e-2	At1g13380	unknown protein	S.X.	H.G.	Please select
0.71	88.0	Ta.12561.2.S1_x_at	CK153998	-	-	4e-2	At1g13380	unknown protein	S.X.	H.G.	Please select
0.70	87.2	Ta.27649.1.S1_at	AB158407.1	CesA protein	-	2e-80	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	S.X.	H.G.	Please select
0.64	83.6	Ta.6466.1.S1_at	BE431148	-	-	1e-29	At5g09870	CESA5 (CELLULOSE SYNTHASE 5)	S.X.	H.G.	Please select
0.55	76.8	Ta.4385.2.A1_at	CK196185	-	-	7e-1	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	S.X.	H.G.	Please select
0.55	76.8	Ta.12561.1.S1_at	CK196288	-	-	3e-2	At1g13380	unknown protein	S.X.	H.G.	Please select
0.48	69.0	Ta.28561.1.S1_at	CK197498	-	-	2e-22	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	S.X.	H.G.	Please select
0.44	64.5	Ta.4447.2.S1_x_at	CA607764	-	-	2e-25	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	97.5	GSM314282	tissue type: 3-5 DAP caryopsis - rep2	GSE12508	Transcription patterns during wheat development
5.0	97.4	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.2	96.6	GSM111187	genotype B68 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1	96.4	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.1	96.4	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
4.0	96.3	GSM111227	genotype F48 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM111145	genotype RL4452 developing seed at 5 days after anthesis, biological rep1	GSE4929	wheat expression level polymorphism study parental genotypes 2 biological reps
3.6	95.6	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.4	95.2	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM138182	genotype A10 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	3e-58	226	TaAffx.1145.1.A1_at	CK211252	-	-	5e+0	At2g32090	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.06	2e-4	48	TaAffx.91997.1.A1_at	BJ287077	-	-	9e-1	At5g12040	carbon-nitrogen hydrolase family protein	C.G.	S.X.	Please select
0.05	2e-1	38	Ta.21732.1.S1_at	CA699598	-	-	4e+0	At2g28500	LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)	C.G.	S.X.	Please select
0.04	6e-1	36	TaAffx.22984.1.S1_at	CA742283	-	-	4e+0	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	C.G.	S.X.	Please select
0.02	6e-1	36	TaAffx.18065.1.S1_at	BJ222351	-	-	1e-3	At2g01420	PIN4 (PIN-FORMED 4)	C.G.	S.X.	Please select
0.04	6e-1	36	TaAffx.113258.1.S1_at	CA616889	-	-	4e+0	At4g14723	-	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.84520.1.S1_at	BJ242228	-	-	5e-1	At2g20940	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.80335.1.S1_at	CA698105	-	-	2e+0	At5g20910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.53435.1.S1_at	CA692356	-	-	4e+0	At4g13440	calcium-binding EF hand family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	Arabidopsis thaliana	At2g45380	819145	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	HgAffx.19326.1.S1_at	CA939854	-	-	3e+0	At3g25120	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.72	2e-135	482	Hordeum vulgare	Contig15728_at	Contig15728	-	-	2e+0	At3g21215	RNA-binding protein, putative	C.G.	S.X.	Please select
0.24	1e-31	139	Oryza sativa	Os.49470.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.5198.2.S1_at	CV257638	-	-	3e-8	Atmg00160	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	7e-1	34	Vitis vinifera	1619162_at	CF403289	-	-	1e-15	At3g54360	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.10	8e-14	77	Zea mays	Zm.17718.1.S1_at	CK370124	-	-	7e+0	At5g41430	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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