Gene omics information

Query gene ID	Ta.11895.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.11895.1.S1_at	BQ171007	-	-	4e-6	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	S.X.	H.G.	Please select
0.73	89.1	TaAffx.84352.1.S1_at	CA638782	-	-	5e-43	At3g61650	TUBG1 (GAMMA-TUBULIN)	S.X.	H.G.	Please select
0.67	86.3	Ta.4932.3.S1_x_at	BJ319726	-	-	4e-28	At5g22330	RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)	S.X.	H.G.	Please select
0.60	81.0	TaAffx.98307.1.S1_at	CA649031	-	-	7e-2	At4g36950	MAPKKK21	S.X.	H.G.	Please select
0.46	66.8	Ta.9770.1.S1_at	BJ230730	-	-	6e+0	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	S.X.	H.G.	Please select
0.38	54.7	Ta.4932.1.A1_a_at	BJ274109	-	-	8e-2	At1g12890	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.6	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM298088	Crown tissue of Solstice at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.7	97.9	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.8	97.2	GSM314271	tissue type: immature inflorescence - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-24	113	Ta.28954.1.A1_at	CA744855	-	-	6e-7	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.08	3e-19	97	TaAffx.116407.1.S1_at	CD492093	-	-	7e-8	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.12	1e-18	95	Ta.20755.1.S1_at	CK192894	-	-	4e-5	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.06	2e-17	91	Ta.25594.1.S1_at	BJ262129	-	-	2e-5	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.08	2e-17	91	Ta.22207.1.S1_at	CA604518	-	-	6e-7	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.07	5e-15	83	Ta.7650.1.A1_at	BJ288960	-	-	1e-7	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.04	2e-14	81	TaAffx.129569.1.S1_s_at	CA746147	-	-	3e-4	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.04	2e-14	81	TaAffx.129569.2.S1_s_at	CA739304	-	-	3e-4	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.08	3e-13	77	Ta.6212.1.S1_x_at	BJ299694	-	-	1e-11	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	4e-6	54	Arabidopsis thaliana	At1g25280	839112	AtTLP10 (TUBBY LIKE PROTEIN 10)	Member of TLP family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-7	57	Glycine max	Gma.8676.1.S1_at	BG239730	-	-	4e-15	At2g18280	AtTLP2 (TUBBY LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.82	0	1118	Hordeum vulgare	Contig8590_at	Contig8590	-	-	5e-9	At2g18280	AtTLP2 (TUBBY LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.41	2e-93	345	Oryza sativa	Os02g0705300	AK101936.1	-	Tubby-like protein 2	1e-7	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	7e-12	73	Populus trichocarpa	Ptp.1963.1.S1_at	CV269324	f-box family protein	-	4e-11	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-17	89	Vitis vinifera	1620298_at	CF513792	hypothetical protein LOC100253937	-	1e-18	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.43	4e-66	252	Zea mays	Zm.13733.1.S1_at	AY106234.1	hypothetical protein LOC100273859	-	1e-2	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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