Gene omics information

Query gene ID	Ta.11777.2.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	83.1	Ta.11777.2.S1_at	CA701022	-	-	3e-1	At5g62720	integral membrane HPP family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	S.X.	H.G.	Please select
0.50	72.4	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	S.X.	H.G.	Please select
0.07	8.6	Ta.1630.2.S1_at	CA668027	-	-	2e+0	At3g14850	unknown protein	S.X.	H.G.	Please select
0.02	3.6	Ta.1680.1.A1_at	BE443749	-	-	3e+0	At5g20181	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.9	99.7	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.6	99.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.2	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.8	99.2	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.7	99.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.1	99.2	GSM250894	TcLr34_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.8	98.9	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
8.0	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.6	98.7	GSM250907	Tc_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.9	98.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	2e-156	551	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.39	2e-76	286	TaAffx.51578.1.S1_at	CA723473	-	-	2e-1	At3g20310	ERF7 (ETHYLINE RESPONSE FACTOR 7)	C.G.	S.X.	Please select
0.08	8e-5	48	Ta.25262.1.S1_at	CD454392	-	-	6e-3	At1g66680	AR401	C.G.	S.X.	Please select
0.11	1e-3	44	TaAffx.38489.1.S1_at	BJ228910	-	-	1e-3	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.07	5e-3	42	TaAffx.38632.1.S1_at	BJ224208	-	-	4e-3	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.04	2e-2	40	TaAffx.96386.2.S1_at	CA690340	-	-	2e+1	At2g12900	DNA binding / transcription factor	C.G.	S.X.	Please select
0.03	2e-2	40	TaAffx.96386.1.S1_at	AJ614346	-	-	8e+0	At1g05760	RTM1 (restricted tev movement 1)	C.G.	S.X.	Please select
0.02	2e-2	40	Ta.13801.1.S1_at	BJ242611	-	-	1e-11	At5g57280	methyltransferase	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.4425.1.S1_at	BT009448.1	-	-	1e-39	At1g19920	APS2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At5g62720	836393	integral membrane HPP family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, chloroplast inner membrane, chloroplast envelope;OBFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	HgAffx.12864.1.S1_at	CB375118	-	-	1e+1	At5g07330	unknown protein	C.G.	S.X.	Please select
0.48	5e-137	486	Hordeum vulgare	Contig8572_s_at	Contig8572	-	-	1e-1	At1g47970	unknown protein	C.G.	S.X.	Please select
0.20	2e-19	97	Oryza sativa	Os04g0673300	AK059734.1	-	ZmRR2 protein (Response regulator 2)	8e-3	At5g19090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.220351.1.S1_at	pmrna36729	hypothetical protein	-	1e+0	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1617369_at	CB916656	-	-	1e-3	At5g58700	phosphoinositide-specific phospholipase C family protein	C.G.	S.X.	Please select
0.17	8e-6	50	Zea mays	Zm.287.1.S1_at	AB042260.1	response regulator	-	7e-5	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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