Gene omics information

Query gene ID	Ta.11777.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.67	86.3	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	S.X.	H.G.	Please select
0.60	81.0	Ta.1909.1.A1_at	BE446796	-	-	5e-2	At3g55390	integral membrane family protein	S.X.	H.G.	Please select
0.55	76.8	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	S.X.	H.G.	Please select
0.44	64.5	Ta.11777.2.S1_at	CA701022	-	-	3e-1	At5g62720	integral membrane HPP family protein	S.X.	H.G.	Please select
0.02	3.6	Ta.28069.1.A1_at	CD454289	LSD1-type zinc finger protein	-	3e-1	At2g21500	protein binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.1	99.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.1	99.0	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
6.9	98.4	GSM250904	TcLr1_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.3	98.2	GSM250907	Tc_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.0	98.0	GSM250890	Tc_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.6	97.8	GSM250910	TcLr1_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5	97.8	GSM250885	TcLr1_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM250884	Tc_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	4e-156	551	Ta.11777.2.S1_at	CA701022	-	-	3e-1	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.29	9e-80	297	Ta.11777.3.S1_at	CA622740	-	-	9e-1	At1g30515	unknown protein	C.G.	S.X.	Please select
0.31	6e-50	198	Ta.1909.1.A1_at	BE446796	-	-	5e-2	At3g55390	integral membrane family protein	C.G.	S.X.	Please select
0.21	2e-49	196	TaAffx.51578.1.S1_at	CA723473	-	-	2e-1	At3g20310	ERF7 (ETHYLINE RESPONSE FACTOR 7)	C.G.	S.X.	Please select
0.17	3e-39	163	TaAffx.82062.1.S1_at	CA678174	-	-	4e+0	At4g20960	cytidine/deoxycytidylate deaminase family protein	C.G.	S.X.	Please select
0.15	3e-24	113	Ta.18787.1.S1_at	CA642169	-	-	2e-1	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.26	2e-22	107	TaAffx.38489.1.S1_at	BJ228910	-	-	1e-3	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.09	1e-11	71	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.12	6e-10	65	TaAffx.38632.1.S1_at	BJ224208	-	-	4e-3	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At3g49430	824105	SRp34a (Ser/Arg-rich protein 34a)	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:nucleolus;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	HgAffx.12864.1.S1_at	CB375118	-	-	1e+1	At5g07330	unknown protein	C.G.	S.X.	Please select
0.67	0	718	Hordeum vulgare	Contig8572_s_at	Contig8572	-	-	1e-1	At1g47970	unknown protein	C.G.	S.X.	Please select
0.26	3e-13	77	Oryza sativa	Os02g0631700	9630.m04024	-	ZmRR2 protein (Response regulator 2)	3e-1	At1g59940	ARR3 (RESPONSE REGULATOR 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.215290.1.S1_at	pmrna29384	hypothetical protein	-	7e-2	At2g16340	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	6e-1	34	Vitis vinifera	1611423_s_at	CB916855	hypothetical protein LOC100254781	-	4e+0	At4g01430	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.30	8e-29	127	Zea mays	Zm.287.1.S1_at	AB042260.1	response regulator	-	7e-5	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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