CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.1143.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.4 Ta.1143.1.S1_at BF473597 - - 1e-13 At1g64550 ATGCN3 S.X. H.G.
0.67 86.3 Ta.3352.1.S1_at CK206169 - - 2e-52 At5g64270 splicing factor, putative S.X. H.G.
0.48 69.0 Ta.4661.1.S1_at BG314545 - - 2e-27 At5g47010 LBA1 (LOW-LEVEL BETA-AMYLASE 1) S.X. H.G.
0.40 58.4 Ta.4661.1.S1_s_at BG314545 - - 2e-27 At5g47010 LBA1 (LOW-LEVEL BETA-AMYLASE 1) S.X. H.G.
0.29 39.2 Ta.12107.1.A1_at BJ218492 - - 1e+0 At4g04580 myb family transcription factor S.X. H.G.
0.22 27.1 Ta.9802.1.A1_at BJ232036 - - 1e+0 At1g23050 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.20 24.0 Ta.4582.1.S1_at CK172043 - - 3e-23 At3g52140 tetratricopeptide repeat (TPR)-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.9 96.1 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.6 95.6 GSM298088 Crown tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.3 95.0 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.2 94.8 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.1 94.5 GSM139929 Anther immature pollen rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.0 94.3 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.9 94.0 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 2e-89 331 TaAffx.25350.1.S1_at CA701813 - - 3e-13 At1g64550 ATGCN3 C.G. S.X.
0.01 4e-7 57 Ta.5891.1.S1_x_at CA695564 - - 3e-4 At3g43790 ZIFL2 (ZINC INDUCED FACILITATOR-like 2) C.G. S.X.
0.01 1e-4 50 Ta.14289.1.S1_at CK198204 triticain beta - 1e-3 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.01 1e-4 50 Ta.13008.1.S1_at CK210275 galactinol synthase - 6e-14 At1g09350 AtGolS3 (Arabidopsis thaliana galactinol synthase 3) C.G. S.X.
0.01 4e-4 48 TaAffx.128736.1.S1_at CA656408 - - 2e-7 At4g35460 NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) C.G. S.X.
0.01 4e-4 48 Ta.14429.2.S1_at CK194622 - - 6e-17 At1g21720 PBC1 (PROTEASOME BETA SUBUNIT C1) C.G. S.X.
0.01 1e-3 46 Ta.8938.1.S1_at BQ162656 - - 6e+0 At4g10940 PHD finger family protein C.G. S.X.
0.01 1e-3 46 Ta.8547.1.S1_at M95747.1 initiation factor (iso)4f p82 subunit - 8e-15 At5g57870 eukaryotic translation initiation factor 4F, putative / eIF-4F, putative C.G. S.X.
0.01 1e-3 46 Ta.5504.1.S1_x_at CK211141 - - 7e+0 At1g01750 ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.21 1e-13 79 Arabidopsis thaliana At1g64550 842763 ATGCN3 member of GCN subfamily - - - C.G. S.X.
0.32 8e-40 167 Glycine max Gma.4290.1.S1_at AF420435.1 ABC transporter-like protein - 2e-101 At1g64550 ATGCN3 C.G. S.X.
0.85 0 1988 Hordeum vulgare Contig5296_s_at Contig5296 - - 4e-25 At1g64550 ATGCN3 C.G. S.X.
0.52 0 1154 Oryza sativa Os02g0826500 AK099841.1 - ATPase components of ABC transporters withduplicated ATPase domains 1e-45 At1g64550 ATGCN3 C.G. S.X.
0.26 5e-44 180 Populus trichocarpa Ptp.6892.1.S1_at DN499828 ABC transporter family protein - 2e-108 At1g64550 ATGCN3 C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1614868_at CB920940 hypothetical protein LOC100266097 - 4e-1 At3g29034 unknown protein C.G. S.X.
0.55 0 1088 Zea mays Zm.4768.1.A1_at AY107116.1 hypothetical protein LOC100192636 - 5e-30 At1g64550 ATGCN3 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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