Gene omics information

Query gene ID	Ta.11338.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.11338.1.S1_at	BQ169872	-	-	3e+0	At4g08593	unknown protein	S.X.	H.G.	Please select
0.77	90.8	Ta.5228.2.A1_a_at	BJ283864	-	-	2e+1	At5g38050	unknown protein	S.X.	H.G.	Please select
0.60	81.0	Ta.11338.3.S1_a_at	CA647367	-	-	4e+0	At3g47200	unknown protein	S.X.	H.G.	Please select
0.59	79.8	Ta.3239.2.A1_a_at	CA641606	-	-	4e+0	At4g09775	-	S.X.	H.G.	Please select
0.55	76.8	Ta.4059.2.S1_s_at	CA701531	-	-	4e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	S.X.	H.G.	Please select
0.50	72.4	Ta.6327.1.S1_at	CA639936	-	-	1e-2	At5g61530	small G protein family protein / RhoGAP family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.5	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
7.0	98.5	GSM143502	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.5	97.8	GSM143509	Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.4	97.7	GSM143516	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.2	97.5	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.1	97.5	GSM143522	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0	97.4	GSM250903	TcLr1_7dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.7	97.1	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	0	910	Ta.11338.2.S1_at	CK162856	-	-	3e+0	At4g08593	unknown protein	C.G.	S.X.	Please select
0.42	0	656	Ta.11338.3.S1_a_at	CA647367	-	-	4e+0	At3g47200	unknown protein	C.G.	S.X.	Please select
0.42	0	656	Ta.11338.3.S1_x_at	CA647367	-	-	4e+0	At3g47200	unknown protein	C.G.	S.X.	Please select
0.24	2e-32	141	Ta.15590.1.S1_at	CA485654	-	-	1e+0	At1g72420	-	C.G.	S.X.	Please select
0.03	3e-9	63	TaAffx.132012.1.S1_s_at	CA592986	-	-	6e+0	At5g42635	glycine-rich protein	C.G.	S.X.	Please select
0.02	5e-8	59	Ta.1623.1.S1_at	CK198130	-	-	7e-1	At3g63095	-	C.G.	S.X.	Please select
0.03	2e-7	57	Ta.28063.1.S1_x_at	CK211968	-	-	3e+1	At5g57567	unknown protein	C.G.	S.X.	Please select
0.03	3e-6	54	Ta.29578.1.S1_s_at	CK200015	-	-	5e+0	At5g03920	unknown protein	C.G.	S.X.	Please select
0.02	1e-5	52	Ta.25198.1.S1_x_at	CK196324	-	-	3e+0	At5g20460	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At4g08593	826421	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	34	Glycine max	HgAffx.23039.1.S1_at	BF014811	-	-	4e+0	At5g58260	-	C.G.	S.X.	Please select
0.39	3e-146	517	Hordeum vulgare	Contig25993_at	Contig25993	-	-	6e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	C.G.	S.X.	Please select
0.52	2e-85	317	Oryza sativa	Os.6542.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-8	61	Populus trichocarpa	Ptp.7038.1.S1_at	CV279113	hypothetical protein	-	2e-16	At4g33360	terpene cyclase/mutase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	36	Vitis vinifera	1615941_at	BQ792716	hypothetical protein LOC100266013	-	3e-16	At4g33360	terpene cyclase/mutase-related	C.G.	S.X.	Please select
0.30	6e-61	234	Zea mays	Zm.19278.1.A1_at	CO529816	hypothetical protein LOC100272889	-	2e-2	At4g33360	terpene cyclase/mutase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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