Gene omics information

Query gene ID	Ta.11161.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.11161.1.A1_at	BQ169532	-	-	2e+0	At4g08360	KOW domain-containing protein	S.X.	H.G.	Please select
0.57	79.2	TaAffx.40189.1.S1_at	AJ613550	-	-	5e-1	At3g23680	F-box family protein-related	S.X.	H.G.	Please select
0.44	64.5	Ta.28600.2.S1_a_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	S.X.	H.G.	Please select
0.40	58.4	Ta.28600.2.S1_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	S.X.	H.G.	Please select
0.35	49.8	TaAffx.46126.1.S1_at	CA597623	-	-	4e+0	At2g14288	-	S.X.	H.G.	Please select
0.33	46.9	Ta.28600.3.S1_x_at	CA641063	-	-	4e-9	At3g45010	scpl48 (serine carboxypeptidase-like 48)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.6	GSM314279	tissue type: anthers, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
13.7	99.5	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
13.3	99.5	GSM138175	genotype A81 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.6	98.3	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
6.3	98.2	GSM138148	genotype F29 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.3	98.2	GSM138213	genotype C10 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.6	97.8	GSM138211	genotype B65 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.5	97.8	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.8	97.2	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
4.3	96.7	GSM138146	genotype G13 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-2	38	TaAffx.119239.1.S1_at	BJ281538	-	-	3e-7	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	C.G.	S.X.	Please select
0.03	2e-1	36	TaAffx.95321.1.S1_at	BJ278226	-	-	2e+0	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.03	2e-1	36	TaAffx.95321.1.S1_s_at	BJ278226	-	-	2e+0	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.17284.1.A1_at	CK207619	-	-	5e+0	At3g10585	myb family transcription factor / I-box binding factor-related protein	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.28917.1.S1_at	CK166116	-	-	8e-1	At1g48000	MYB112 (myb domain protein 112)	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.28917.1.S1_x_at	CK166116	-	-	8e-1	At1g48000	MYB112 (myb domain protein 112)	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.23758.1.S1_x_at	U73214.1	cold acclimation protein WCOR518	-	1e+1	At4g38390	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Ta.23758.1.S1_at	U73214.1	-	-	1e+1	At4g38390	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	Ta.18076.3.S1_at	CA629928	-	-	4e+0	At4g20390	integral membrane family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At4g08360	826392	KOW domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	8e-1	34	Glycine max	GmaAffx.30373.1.S1_at	BQ740497	-	-	1e+1	At5g43245	unknown protein	C.G.	S.X.	Please select
0.23	5e-49	192	Hordeum vulgare	Contig15998_at	Contig15998	-	-	4e-1	At1g58380	XW6	C.G.	S.X.	Please select
0.25	4e-22	105	Oryza sativa	Os05g0562800	AK064046.1	-	Protein of unknown function DUF679 family protein	2e-1	At5g64830	programmed cell death 2 C-terminal domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.37656.1.A1_at	CV243316	-	-	4e+0	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	30	Vitis vinifera	1622192_at	CB974809	-	-	8e+0	At5g14710	-	C.G.	S.X.	Please select
0.03	2e-1	34	Zea mays	Zm.8904.1.A1_at	CK371274	-	-	5e+0	At3g53550	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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