Gene omics information

Query gene ID	Ta.10760.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.10760.1.S1_at	BQ806324	-	-	5e-1	At1g70310	SPDS2 (spermidine synthase 2)	S.X.	H.G.	Please select
0.40	58.4	Ta.27950.1.S1_at	CD923913	-	-	4e+0	At3g09590	pathogenesis-related protein, putative	S.X.	H.G.	Please select
0.29	39.2	Ta.28535.1.S1_at	BJ289039	-	-	1e+0	At5g55135	unknown protein	S.X.	H.G.	Please select
0.19	22.4	Ta.13396.2.S1_at	BJ287941	-	-	3e+0	At2g15050	LTP	S.X.	H.G.	Please select
0.18	21.0	Ta.5760.1.S1_at	CD922076	-	-	2e+0	At5g55135	unknown protein	S.X.	H.G.	Please select
0.09	10.4	Ta.28848.1.S1_at	BQ579494	-	-	4e+0	At1g18970	GLP4 (GERMIN-LIKE PROTEIN 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
139.1	100.0	GSM314284	tissue type: 22 DAP embryo - rep1	GSE12508	Transcription patterns during wheat development
89.9	100.0	GSM314285	tissue type: 22 DAP embryo - rep2	GSE12508	Transcription patterns during wheat development
55.0	99.9	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
13.1	99.4	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.4	99.1	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.5	98.9	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
6.7	98.4	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
1.8	88.1	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Ta.9490.1.S1_at	BM137340	-	-	6e+0	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	C.G.	S.X.	Please select
0.02	1e-1	38	Ta.4048.1.S1_at	BJ275846	-	-	3e-3	At5g60020	LAC17 (laccase 17)	C.G.	S.X.	Please select
0.02	5e-1	36	TaAffx.80544.2.S1_at	CA695523	-	-	1e+0	At1g44080	F-box protein-related / C-type lectin-related	C.G.	S.X.	Please select
0.03	5e-1	36	TaAffx.55442.1.S1_at	CA666049	-	-	9e-1	At4g34470	ASK12 (ARABIDOPSIS SKP1-LIKE 12)	C.G.	S.X.	Please select
0.03	5e-1	36	TaAffx.51238.1.S1_at	CA728913	-	-	4e+0	At1g77400	-	C.G.	S.X.	Please select
0.02	5e-1	36	TaAffx.104986.1.S1_at	CA741855	-	-	4e+0	At3g56180	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	36	Ta.9223.1.A1_at	BJ290167	-	-	6e+0	At3g01590	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.02	5e-1	36	Ta.920.2.S1_x_at	CD881929	-	-	7e+0	At5g48760	60S ribosomal protein L13A (RPL13aD)	C.G.	S.X.	Please select
0.02	5e-1	36	Ta.920.1.S1_x_at	CK214652	-	-	2e+0	At2g26500	cytochrome b6f complex subunit (petM), putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At1g70310	843367	SPDS2 (spermidine synthase 2)	Spermidine synthase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.61647.1.S1_at	AI736600	-	-	3e+0	At5g65130	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.18	4e-43	174	Hordeum vulgare	Contig18451_at	Contig18451	-	-	5e-2	At2g05510	glycine-rich protein	C.G.	S.X.	Please select
0.15	3e-13	77	Oryza sativa	Os06g0487800	AU082409	-	-	4e-1	At2g05510	glycine-rich protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.221669.1.S1_s_at	pmrna38669	hypothetical protein	-	2e+0	At3g27831	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	9e+0	30	Vitis vinifera	1615651_at	BM436482	-	-	4e-1	At5g39720	AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)	C.G.	S.X.	Please select
0.03	8e-1	34	Zea mays	ZmAffx.1145.1.A1_at	AW400072	-	-	1e-2	At1g67570	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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