CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.10688.1.S1_at

Gene name indole synthase

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.10688.1.S1_at AB094060.1 indole synthase - 3e-3 At4g02610 tryptophan synthase, alpha subunit, putative S.X. H.G.
0.80 92.2 Ta.21388.1.S1_at CA675057 - - 1e+1 At5g64810 WRKY51 S.X. H.G.
0.80 92.2 TaAffx.99036.1.A1_at CK211911 - - 5e+0 At1g23040 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.67 86.3 Ta.3380.1.S1_at AB042629.1 - - 2e-2 At2g36026 - S.X. H.G.
0.61 82.0 Ta.3381.1.S1_at AF123602.1 - - 9e-1 At4g31940 CYP82C4 S.X. H.G.
0.59 79.8 Ta.1362.1.S1_at AB042631.1 - - 1e-2 At5g25130 CYP71B12 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
82.9 100.0 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
67.9 100.0 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
64.8 99.9 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
58.2 99.9 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
42.7 99.9 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
35.8 99.9 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
5.0 97.4 GSM314263 tissue type: seedling, crown - rep1 GSE12508 Transcription patterns during wheat development
2.1 90.3 GSM314264 tissue type: seedling, crown - rep2 GSE12508 Transcription patterns during wheat development
1.8 88.1 GSM315202 target strand labeled: Sense - rep1 GSE12528 Wheat "Chinese Spring" natural antisense transcription survey
1.4 83.5 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.18 4e-36 153 Ta.27207.1.S1_at BT009176.1 - - 2e+0 At5g43540 zinc finger (C2H2 type) family protein C.G. S.X.
0.14 3e-9 63 Ta.29424.1.A1_a_at CK205869 - - 3e-1 At4g02610 tryptophan synthase, alpha subunit, putative C.G. S.X.
0.05 1e-2 42 Ta.27531.1.A1_at BT009154.1 - - 4e+0 At3g15190 chloroplast 30S ribosomal protein S20, putative C.G. S.X.
0.05 1e-2 42 Ta.27531.1.S1_at BT009154.1 - - 4e+0 At3g15190 chloroplast 30S ribosomal protein S20, putative C.G. S.X.
0.02 2e-1 38 TaAffx.42053.1.S1_at BQ605668 - - 1e+0 At5g01500 mitochondrial substrate carrier family protein C.G. S.X.
0.01 2e-1 38 Ta.3539.1.S1_x_at BF200485 Phosphomannomutase - 1e-11 At2g45790 PMM (PHOSPHOMANNOMUTASE) C.G. S.X.
0.02 7e-1 36 TaAffx.75937.1.S1_at BG905833 - - 2e+1 At5g62750 unknown protein C.G. S.X.
0.02 7e-1 36 TaAffx.26686.1.S1_at CA686149 - - 4e+0 At4g37790 HAT22 C.G. S.X.
0.01 7e-1 36 Ta.6764.1.S1_at BJ310765 - - 8e-1 At3g44350 anac061 (Arabidopsis NAC domain containing protein 61) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-3 44 Arabidopsis thaliana At4g02610 828226 tryptophan synthase, alpha subunit, putative F:tryptophan synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFPM - - - C.G. S.X.
0.09 4e-6 54 Glycine max Gma.6127.1.S1_at BI315808 tryptophan synthase alpha subunit - 6e-22 At4g02610 tryptophan synthase, alpha subunit, putative C.G. S.X.
0.28 3e-20 99 Hordeum vulgare Contig13038_at Contig13038 - - 3e-4 At3g54640 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) C.G. S.X.
0.38 3e-29 131 Oryza sativa Os03g0797400 AK072595.1 - Tryptophan synthase, alpha chain domain containingprotein 4e-2 At5g66090 unknown protein C.G. S.X.
0.11 3e-16 87 Populus trichocarpa Ptp.415.1.A1_at CK088975 hypothetical protein - 1e-18 At4g02610 tryptophan synthase, alpha subunit, putative C.G. S.X.
0.03 3e+0 32 Vitis vinifera 1614253_at CB971268 hypothetical protein LOC100252844 - 5e-15 At4g02610 tryptophan synthase, alpha subunit, putative C.G. S.X.
0.42 1e-117 422 Zea mays Zm.283.1.S1_at AY254104.1 benzoxazinless1 - 5e-2 At4g01220 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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