Gene omics information

Query gene ID	Ta.1058.3.S1_x_at
Gene name	S-adenosylmethionine decarboxylase precursor
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.1058.3.S1_x_at	CN013117	S-adenosylmethionine decarboxylase precursor	-	8e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	S.X.	H.G.	Please select
0.83	93.4	Ta.1058.1.S1_x_at	CK168726	S-adenosylmethionine decarboxylase precursor	-	5e-12	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	S.X.	H.G.	Please select
0.83	93.4	Ta.1058.2.S1_x_at	BJ254771	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	S.X.	H.G.	Please select
0.50	72.4	Ta.28553.6.S1_x_at	BJ221503	-	-	7e-47	At4g02890	UBQ14	S.X.	H.G.	Please select
0.50	72.4	Ta.1058.2.S1_at	BJ254771	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	S.X.	H.G.	Please select
0.42	60.9	Ta.1078.2.S1_a_at	BJ252383	Cyclophilin	-	8e-6	At4g38740	ROC1 (ROTAMASE CYP 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.5	92.5	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.3	91.5	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.1	90.3	GSM111251	genotype A35 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
1.9	88.9	GSM111177	genotype E5 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
1.9	88.9	GSM324488	Si- B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
1.9	88.9	GSM324494	Si+ B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
1.8	88.1	GSM111217	genotype D15 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
1.8	88.1	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.70	0	2746	Ta.1058.1.S1_x_at	CK168726	S-adenosylmethionine decarboxylase precursor	-	5e-12	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	C.G.	S.X.	Please select
0.52	0	1435	TaAffx.120885.1.S1_s_at	CA694004	S-adenosylmethionine decarboxylase precursor	-	3e-11	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	C.G.	S.X.	Please select
0.34	1e-161	571	Ta.1058.2.S1_at	BJ254771	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	C.G.	S.X.	Please select
0.34	1e-161	571	Ta.1058.2.S1_x_at	BJ254771	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	C.G.	S.X.	Please select
0.27	1e-161	571	Ta.1058.2.A1_at	CK154533	-	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	C.G.	S.X.	Please select
0.08	1e-102	375	Ta.1058.4.S1_at	BJ307805	-	-	5e-12	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	C.G.	S.X.	Please select
0.30	3e-97	357	Ta.9063.1.S1_x_at	CK169206	-	-	3e-4	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	C.G.	S.X.	Please select
0.34	1e-87	325	TaAffx.112609.1.S1_at	CA620368	-	-	8e-4	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	C.G.	S.X.	Please select
0.16	8e-73	276	Ta.9063.2.A1_at	CK151676	-	-	9e-9	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-5	50	Arabidopsis thaliana	At3g02470	821214	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-9	65	Glycine max	Gma.4295.1.S1_s_at	AF488307.1	S-adenosylmethionine decarboxylase	-	7e-17	At3g25570	adenosylmethionine decarboxylase family protein	C.G.	S.X.	Please select
0.44	0	1128	Hordeum vulgare	Contig501_s_at	Contig501	-	-	8e-15	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	C.G.	S.X.	Please select
0.41	0	690	Oryza sativa	Os04g0498600	AF067194.1	-	S- adenosylmethionine decarboxylase beta chain]	2e-5	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-7	59	Populus trichocarpa	PtpAffx.1286.5.S1_s_at	BU877385	hypothetical protein	-	1e-7	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e-2	40	Vitis vinifera	1615818_at	CD010936	-	-	1e+0	At3g58700	60S ribosomal protein L11 (RPL11B)	C.G.	S.X.	Please select
0.45	7e-167	587	Zea mays	Zm.14951.4.S1_at	BM380686	S-adenosylmethionine decarboxylase proenzyme	-	7e-11	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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