Gene omics information

Query gene ID	Ta.10408.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	S.X.	H.G.	Please select
0.67	86.3	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.60	81.0	Ta.1909.1.A1_at	BE446796	-	-	5e-2	At3g55390	integral membrane family protein	S.X.	H.G.	Please select
0.55	76.8	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	S.X.	H.G.	Please select
0.50	72.4	Ta.11777.2.S1_at	CA701022	-	-	3e-1	At5g62720	integral membrane HPP family protein	S.X.	H.G.	Please select
0.03	4.7	Ta.1630.2.S1_at	CA668027	-	-	2e+0	At3g14850	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.0	99.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.0	99.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.7	99.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.6	99.1	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.2	99.0	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.4	98.9	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
8.0	98.8	GSM250883	Tc_3dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250890	Tc_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
7.1	98.5	GSM250886	TcLr1_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	1e-143	510	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	C.G.	S.X.	Please select
0.20	8e-65	248	Ta.10408.2.A1_at	CA651244	-	-	6e+0	At5g65300	unknown protein	C.G.	S.X.	Please select
0.15	3e-30	133	TaAffx.58537.1.S1_at	CA618748	-	-	1e+0	At5g05365	metal ion binding	C.G.	S.X.	Please select
0.26	1e-23	111	TaAffx.113141.1.S1_at	CA617704	-	-	2e-8	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.09	1e-11	71	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.13	2e-10	67	TaAffx.38489.1.S1_at	BJ228910	-	-	1e-3	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.05	2e-4	48	Ta.11777.2.S1_at	CA701022	-	-	3e-1	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.04	6e-4	46	Ta.18787.1.S1_at	CA642169	-	-	2e-1	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.07	9e-3	42	TaAffx.38632.1.S1_at	BJ224208	-	-	4e-3	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-10	67	Arabidopsis thaliana	At1g10470	837587	ARR4 (RESPONSE REGULATOR 4)	Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	2e-7	57	Glycine max	Gma.3911.1.S1_at	BE822480	-	-	3e-24	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.84	0	1021	Hordeum vulgare	Contig5953_at	Contig5953	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	C.G.	S.X.	Please select
0.42	2e-79	297	Oryza sativa	Os11g0143300	AK058585.1	-	-	5e-7	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	5e-5	50	Populus trichocarpa	PtpAffx.213255.1.S1_s_at	pmrna25930	type-a response regulator	-	3e-37	At2g41310	ATRR3 (RESPONSE REGULATOR 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e-11	69	Vitis vinifera	1608140_at	CF211124	hypothetical protein LOC100258759	-	2e-16	At3g48100	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)	C.G.	S.X.	Please select
0.29	4e-74	278	Zea mays	Zm.325.1.A1_at	AB042268.1	response regulator 6	-	2e-7	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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