Gene omics information

Query gene ID	Ta.10390.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	74.9	Ta.10390.1.S1_at	CK168322	-	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	S.X.	H.G.	Please select
0.50	72.4	Ta.10390.2.A1_x_at	BJ242559	-	-	2e+1	Atcg00730	-	S.X.	H.G.	Please select
0.50	72.4	Ta.10390.2.A1_a_at	BJ242559	-	-	2e+1	Atcg00730	-	S.X.	H.G.	Please select
0.40	58.4	Ta.11161.1.A1_at	BQ169532	-	-	2e+0	At4g08360	KOW domain-containing protein	S.X.	H.G.	Please select
0.29	39.2	TaAffx.40189.1.S1_at	AJ613550	-	-	5e-1	At3g23680	F-box family protein-related	S.X.	H.G.	Please select
0.20	24.0	Ta.28600.2.S1_a_at	CA720107	-	-	1e-7	At3g45010	scpl48 (serine carboxypeptidase-like 48)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.4	99.5	GSM111230	genotype B33 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
11.6	99.3	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.7	99.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
9.7	99.1	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.5	99.1	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
9.0	99.0	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
8.3	98.8	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.2	98.8	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
7.9	98.7	GSM111192	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
7.4	98.6	GSM111209	genotype F36 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	0	771	Ta.10390.2.A1_a_at	BJ242559	-	-	2e+1	Atcg00730	-	C.G.	S.X.	Please select
0.50	0	771	Ta.10390.2.A1_x_at	BJ242559	-	-	2e+1	Atcg00730	-	C.G.	S.X.	Please select
0.20	7e-26	119	Ta.5004.1.S1_at	CA721837	-	-	8e-3	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select
0.04	1e-18	95	Ta.447.2.S1_a_at	CA620496	-	-	7e-19	At4g26530	fructose-bisphosphate aldolase, putative	C.G.	S.X.	Please select
0.05	6e-17	89	TaAffx.132270.1.A1_at	CK211144	-	-	1e+0	At5g66260	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.03	6e-17	89	Ta.1823.1.A1_at	CK194264	-	-	7e-7	At3g60910	catalytic/ methyltransferase	C.G.	S.X.	Please select
0.04	1e-15	85	TaAffx.16936.1.S1_at	CK216481	fasciclin-like protein FLA16 /// fasciclin-like protein FLA17	-	2e+0	At3g54560	HTA11	C.G.	S.X.	Please select
0.04	1e-15	85	TaAffx.128643.6.S1_at	CK218028	-	-	2e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	C.G.	S.X.	Please select
0.04	1e-15	85	Ta.8558.1.S1_at	BQ280941	-	-	6e-1	At5g37140	tRNA-splicing endonuclease positive effector-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-5	50	Arabidopsis thaliana	At4g35350	829688	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	tracheary element vacuolar protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-2	40	Glycine max	PsAffx.psHB040xB21f_s_at	PsAffx.psHB040xB21f	-	-	6e-1	At2g20613	unknown protein	C.G.	S.X.	Please select
0.72	0	1384	Hordeum vulgare	Contig5626_s_at	Contig5626	-	-	2e+0	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select
0.50	5e-90	333	Oryza sativa	Os08g0556900	AK099308.1	-	Cysteine proteinase (EC 3.4.22.-)	1e-2	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	36	Populus trichocarpa	PtpAffx.224610.1.S1_at	pmrna43309	hypothetical protein	-	2e-6	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-5	50	Vitis vinifera	1620844_at	CB978855	hypothetical protein LOC100264473	-	3e-14	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select
0.53	6e-160	563	Zea mays	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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