Gene omics information

Query gene ID	Ta.10089.3.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	Ta.10089.3.S1_x_at	CA663398	-	-	3e+0	At5g20130	unknown protein	S.X.	H.G.	Please select
0.55	76.8	Ta.10089.3.S1_a_at	CA663398	-	-	3e+0	At5g20130	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.10089.1.S1_x_at	CK195398	-	-	3e-7	At5g64440	AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)	S.X.	H.G.	Please select
0.07	8.6	Ta.9306.2.S1_x_at	BE493280	-	-	6e+0	At5g46870	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.03	4.7	Ta.12197.1.A1_at	BQ801071	-	-	5e+0	At3g48231	LCR48 (Low-molecular-weight cysteine-rich 48)	S.X.	H.G.	Please select
0.02	3.6	Ta.12676.1.S1_at	CK162155	-	-	6e-4	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.2	98.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.9	97.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.2	96.6	GSM143507	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.1	96.4	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.2	94.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM138144	Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	696	Ta.10089.3.S1_a_at	CA663398	-	-	3e+0	At5g20130	unknown protein	C.G.	S.X.	Please select
0.20	6e-128	456	Ta.10089.1.S1_x_at	CK195398	-	-	3e-7	At5g64440	AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)	C.G.	S.X.	Please select
0.32	1e-85	315	Ta.9538.1.A1_at	BJ309490	-	-	2e+0	At3g44735	PSK1	C.G.	S.X.	Please select
0.02	3e+0	32	Ta.6942.1.A1_at	CA615822	-	-	2e-1	At2g46270	GBF3 (G-BOX BINDING FACTOR 3)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.5400.2.S1_at	BJ246556	-	-	1e+0	At1g17080	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Ta.2876.1.S1_x_at	BE417035	-	-	2e-22	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	C.G.	S.X.	Please select
0.01	3e+0	32	Ta.2790.1.S1_at	AF464903.1	repressor protein	-	4e-12	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	C.G.	S.X.	Please select
0.03	3e+0	32	Ta.20631.2.S1_at	CA484140	-	-	1e-13	At5g46020	unknown protein	C.G.	S.X.	Please select
0.04	1e+1	30	TaAffx.97533.2.S1_at	BG908072	-	-	3e+0	At1g65620	AS2 (ASYMMETRIC LEAVES 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g20130	832135	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.2965.1.S1_at	AW666410	-	-	3e+0	At5g48175	unknown protein	C.G.	S.X.	Please select
0.56	1e-124	444	Hordeum vulgare	Contig6456_s_at	Contig6456	-	-	4e+0	At3g16120	dynein light chain, putative	C.G.	S.X.	Please select
0.18	3e-35	149	Oryza sativa	Os04g0102700	AK101740.1	-	N-acylethanolamine amidohydrolase	7e-2	At5g64440	AtFAAH (Arabidopsis thaliana fatty acid amide hydrolase)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	Ptp.4570.1.A1_at	DN488693	hypothetical protein	-	4e-12	At5g11520	ASP3 (ASPARTATE AMINOTRANSFERASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	30	Vitis vinifera	1617813_at	CD798405	hypothetical protein LOC100247886	-	1e-3	At2g27230	LHW (LONESOME HIGHWAY)	C.G.	S.X.	Please select
0.02	3e-1	34	Zea mays	Zm.3699.7.S1_at	CK371636	Ribosomal proteinS6	-	1e-60	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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