Gene omics information

Query gene ID	S0001100030D09F1_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	S0001100030D09F1_x_at	S0001100030D09F1	-	-	4e-2	At4g34180	cyclase family protein	S.X.	H.G.	Please select
0.76	89.8	Contig6141_s_at	Contig6141	-	-	6e-1	At3g54560	HTA11	S.X.	H.G.	Please select
0.75	89.5	S0001100126A06F1_x_at	S0001100126A06F1	-	-	7e-4	At1g32900	starch synthase, putative	S.X.	H.G.	Please select
0.74	89.1	Contig3654_s_at	Contig3654	-	-	2e-36	At3g20050	ATTCP-1	S.X.	H.G.	Please select
0.70	86.0	Contig9074_at	Contig9074	-	-	3e+0	At4g32950	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.67	84.7	Contig3652_at	Contig3652	-	-	3e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	S.X.	H.G.	Please select
0.61	78.7	HY07K02u_at	HY07K02u	-	-	3e+0	At1g03730	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig500_at	Contig500	-	-	4e-19	At5g59690	histone H4	S.X.	H.G.	Please select
0.58	74.9	Contig10719_at	Contig10719	-	-	4e-1	At5g45580	transcription factor	S.X.	H.G.	Please select
0.58	74.9	Contig4909_at	Contig4909	-	-	6e-4	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
108.1	100.0	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
64.3	100.0	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
51.4	100.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
36.2	99.9	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
23.8	99.8	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.4	99.5	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
14.4	99.5	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
13.0	99.4	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
13.0	99.4	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-70	264	Contig694_at	Contig694	-	-	5e-6	At1g32900	starch synthase, putative	C.G.	S.X.	Please select
0.74	5e-52	202	S0001100126A06F1_x_at	S0001100126A06F1	-	-	7e-4	At1g32900	starch synthase, putative	C.G.	S.X.	Please select
0.04	7e-2	36	Contig22235_at	Contig22235	-	-	2e+1	At5g15560	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Contig18179_at	Contig18179	-	-	3e-1	At1g11750	CLPP6	C.G.	S.X.	Please select
0.02	1e+0	32	Contig6544_at	Contig6544	-	-	1e-76	At1g21690	emb1968 (embryo defective 1968)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig10573_s_at	Contig10573	-	-	9e-12	At4g29520	-	C.G.	S.X.	Please select
0.03	1e+0	32	Contig20223_at	Contig20223	-	-	5e+0	At3g07525	ATG10 (autophagy 10)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig19727_at	Contig19727	-	-	1e+0	At5g51790	basix helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	4e+0	30	Contig3958_s_at	Contig3958	-	-	9e-15	At1g73030	VPS46.2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-2	38	Arabidopsis thaliana	At4g34180	829566	cyclase family protein	F:molecular_function unknown;P:response to salt stress;C:cell wall;BOAPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	36	Glycine max	GmaAffx.54683.1.S1_at	BG881916	-	-	3e+0	At4g09040	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	7e-2	38	Oryza sativa	Os06g0133100	AK109227.1	-	Hypothetical protein	4e-1	At2g31955	CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.222141.1.S1_s_at	pmrna39377	hypothetical protein	-	8e-1	At5g41030	TCP family transcription factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	1e-35	149	Triticum aestivum	Ta.24114.4.A1_x_at	BQ235970	glycogen (starch) synthase	-	1e+0	At4g35025	unknown protein	C.G.	S.X.	Please select
0.05	3e+0	30	Vitis vinifera	1619942_at	CF568925	-	-	3e+0	At3g57370	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select
0.12	2e-8	57	Zea mays	Zm.12134.3.A1_a_at	AI737095	waxy1	-	2e+0	At4g08691	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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