Gene omics information

Query gene ID	S0001000058H07F1_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	S0001000058H07F1_s_at	S0001000058H07F1	-	-	4e+0	At5g50180	protein kinase, putative	S.X.	H.G.	Please select
0.73	88.7	EBpi07_SQ001_B14_s_at	EBpi07_SQ001_B14	-	-	2e+0	At3g27520	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig10250_s_at	Contig10250	-	-	2e-5	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	S.X.	H.G.	Please select
0.67	84.7	Contig10392_at	Contig10392	-	-	1e-13	At1g16820	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related	S.X.	H.G.	Please select
0.50	66.9	Contig5240_at	Contig5240	-	-	4e-5	At2g43030	ribosomal protein L3 family protein	S.X.	H.G.	Please select
0.50	66.9	Contig3728_at	Contig3728	-	-	9e-28	At3g62560	GTP-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
79.8	100.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
49.6	99.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
49.1	99.9	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
46.9	99.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
40.3	99.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
31.2	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
20.0	99.7	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
17.3	99.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.9	99.3	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.9	99.3	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-66	248	Contig5239_at	Contig5239	-	-	1e-9	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	C.G.	S.X.	Please select
0.04	2e+0	30	HT06B11r_at	HT06B11r	-	-	3e-1	At3g48344	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	30	Contig16123_at	Contig16123	-	-	2e-1	At5g07130	LAC13 (laccase 13)	C.G.	S.X.	Please select
0.01	2e+0	30	Contig9475_at	Contig9475	-	-	1e-33	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	C.G.	S.X.	Please select
0.05	2e+0	30	HD04G09u_at	HD04G09u	-	-	1e+0	At2g46690	auxin-responsive family protein	C.G.	S.X.	Please select
0.04	2e+0	30	HVSMEn0006E24f2_x_at	HVSMEn0006E24f2	-	-	1e+0	At2g04870	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	30	HVSMEn0006E24f2_s_at	HVSMEn0006E24f2	-	-	1e+0	At2g04870	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	30	HVSMEn0006E24f2_at	HVSMEn0006E24f2	-	-	1e+0	At2g04870	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	30	Contig9029_at	Contig9029	-	-	4e-8	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	30	Arabidopsis thaliana	At5g50180	835083	protein kinase, putative	F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e+0	30	Glycine max	HgAffx.14749.1.S1_at	CB299749	-	-	9e+0	Atcg00710	-	C.G.	S.X.	Please select
0.02	8e+0	30	Oryza sativa	Os02g0613400	AK108796.1	-	Hypothetical protein	2e-13	At2g25320	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	34	Populus trichocarpa	PtpAffx.11630.1.A1_at	CV258476	-	-	1e+0	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-18	91	Triticum aestivum	Ta.10307.1.A1_at	BJ275014	-	-	2e-8	At5g26120	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	C.G.	S.X.	Please select
0.06	1e+0	30	Vitis vinifera	1616097_at	CB917778	hypothetical protein LOC100259438	-	2e-4	At2g43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.04	7e+0	28	Zea mays	Zm.3736.1.A1_at	AY108005.1	-	-	1e+0	At4g25225	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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