Gene omics information

Query gene ID	S0000800072B12F1_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	S.X.	H.G.	Please select
0.78	91.2	HVSMEf0019H01r2_at	HVSMEf0019H01r2	-	-	1e+1	At3g27460	unknown protein	S.X.	H.G.	Please select
0.77	90.8	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	S.X.	H.G.	Please select
0.73	88.7	HS08P03u_at	HS08P03u	-	-	9e+0	At2g18530	protein kinase family protein	S.X.	H.G.	Please select
0.71	87.1	HVSMEh0084N15r2_s_at	HVSMEh0084N15r2	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	S.X.	H.G.	Please select
0.61	78.7	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	S.X.	H.G.	Please select
0.61	78.7	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	S.X.	H.G.	Please select
0.61	78.7	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	S.X.	H.G.	Please select
0.59	75.8	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.7	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.4	96.6	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.4	96.6	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.2	96.3	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
3.9	95.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.9	95.8	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.9	95.8	GSM160464	drought control rep1	GSE6990	Barley drought stress
3.7	95.5	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	34	Contig17064_s_at	Contig17064	-	-	4e+0	At1g05760	RTM1 (restricted tev movement 1)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig11649_at	Contig11649	-	-	1e-1	At1g21840	UREF (urease accessory protein F)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig7407_at	Contig7407	-	-	5e-5	At5g03900	-	C.G.	S.X.	Please select
0.02	4e+0	30	Contig7525_at	Contig7525	-	-	8e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	C.G.	S.X.	Please select
0.02	4e+0	30	Contig4946_at	Contig4946	-	-	1e-5	At4g01060	CPL3 (CAPRICE-LIKE MYB3)	C.G.	S.X.	Please select
0.02	4e+0	30	Contig13779_at	Contig13779	-	-	3e+0	At4g38090	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Contig25334_at	Contig25334	-	-	4e-1	At2g19640	ASHR2 (ASH1-RELATED PROTEIN 2)	C.G.	S.X.	Please select
0.03	4e+0	30	Contig5_x_at	Contig5	-	-	7e+0	At2g40220	ABI4 (ABA INSENSITIVE 4)	C.G.	S.X.	Please select
0.04	4e+0	30	Contig4948_s_at	Contig4948	-	-	4e-6	At4g01060	CPL3 (CAPRICE-LIKE MYB3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e+0	30	Arabidopsis thaliana	At1g07476	837261	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+1	30	Glycine max	GmaAffx.89117.1.A1_at	CK605607	-	-	3e-6	At2g01970	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.04	2e+1	30	Oryza sativa	Os.9446.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-1	34	Populus trichocarpa	PtpAffx.75349.1.A1_at	CV273498	-	-	2e+0	At4g12720	NUDT7	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	32	Triticum aestivum	TaAffx.85549.1.S1_at	CA621818	-	-	3e+0	At1g73510	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1607117_at	CF515513	hypothetical protein LOC100255965	-	2e-2	At5g36960	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	28	Zea mays	Zm.5741.1.A1_at	AI637202	hypothetical protein LOC100216923	-	5e+0	At3g22510	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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