CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.99938.1.A1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 86.0 PtpAffx.99938.1.A1_s_at BP937099 hypothetical protein - 2e+0 At4g21810 DER2.1 (DERLIN-2.1) S.X. H.G.
0.50 78.6 Ptp.3607.1.S1_at DN492774 hypothetical protein - 6e-1 At1g68440 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.158803.1.S1_at CX179737 hypothetical protein - 2e-6 At1g68440 unknown protein S.X. H.G.
0.40 67.0 PtpAffx.203374.1.S1_x_at pmrna6714 hypothetical protein - 3e-29 At5g47910 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) S.X. H.G.
0.23 40.5 PtpAffx.206736.1.S1_at pmrna13375 hypothetical protein - 4e-58 At2g25737 unknown protein S.X. H.G.
0.09 14.6 PtpAffx.79915.1.S1_s_at CV233367 hypothetical protein - 3e-6 At1g23870 ATTPS9 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.9 98.9 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
7.2 98.1 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
7.2 98.1 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
6.5 97.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
6.3 97.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.6 97.2 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.6 96.2 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.1 95.5 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 9e-149 525 Ptp.3607.1.S1_at DN492774 hypothetical protein - 6e-1 At1g68440 unknown protein C.G. S.X.
0.28 3e-62 238 PtpAffx.24948.1.A1_at CV240293 hypothetical protein - 6e+0 At5g05670 signal recognition particle binding C.G. S.X.
0.03 8e-1 34 PtpAffx.9992.1.S1_at CV280429 hypothetical protein - 6e-4 At5g09440 EXL4 (EXORDIUM LIKE 4) C.G. S.X.
0.02 8e-1 34 PtpAffx.211512.1.S1_at pmrna22554 hypothetical protein - 4e-2 At4g00770 unknown protein C.G. S.X.
0.03 8e-1 34 PtpAffx.13438.1.S1_s_at AI167052 hypothetical protein - 2e-96 At3g28715 H+-transporting two-sector ATPase, putative C.G. S.X.
0.03 3e+0 32 PtpAffx.94756.1.S1_at DN498310 hypothetical protein - 5e-47 At1g33270 patatin-related C.G. S.X.
0.02 3e+0 32 PtpAffx.217036.1.S1_at pmrna32153 hypothetical protein - 7e-1 At1g27390 TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) C.G. S.X.
0.02 3e+0 32 PtpAffx.213910.1.S1_at pmrna27123 hypothetical protein - 3e-12 At3g01270 pectate lyase family protein C.G. S.X.
0.04 1e+1 30 PtpAffx.76011.1.A1_at CV247655 - - 1e+1 At5g67110 ALC (ALCATRAZ) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 32 Arabidopsis thaliana At4g21810 828269 DER2.1 (DERLIN-2.1) F:molecular_function unknown;P:proteolysis;C:cellular_component unknown;MOFP - - - C.G. S.X.
0.06 9e-1 34 Glycine max Gma.8960.1.S1_at BU764949 - - 2e-1 At2g25280 - C.G. S.X.
0.05 3e-1 34 Hordeum vulgare Contig15335_s_at Contig15335 - - 1e-3 At3g56850 AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3) C.G. S.X.
0.05 1e-3 44 Oryza sativa Os01g0559700 NM_193502.1 - Hypothetical protein 5e+0 At3g26510 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein C.G. S.X.
0.06 2e-1 36 Triticum aestivum TaAffx.106177.1.S1_at CA723573 - - 3e+0 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) C.G. S.X.
0.14 5e-14 75 Vitis vinifera 1608381_at CA818836 hypothetical protein LOC100244058 - 1e-1 At3g17950 unknown protein C.G. S.X.
0.04 3e-1 34 Zea mays Zm.4457.1.A1_at BG266182 hypothetical protein LOC100194059 /// hypothetical protein LOC100276691 - 1e+0 At1g78790 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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