CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.99892.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 79.4 PtpAffx.99892.1.S1_at BU869133 hypothetical protein - 2e+0 At2g40380 PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) S.X. H.G.
0.91 99.2 PtpAffx.224460.1.S1_x_at pmrna43015 hypothetical protein - 6e-1 At2g38780 unknown protein S.X. H.G.
0.90 97.9 Ptp.7132.2.S1_at DN494473 - - 4e-1 At5g06710 HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA) S.X. H.G.
0.90 97.9 PtpAffx.140514.1.A1_at CV255394 - - 2e-1 At1g13080 CYP71B2 (CYTOCHROME P450 71B2) S.X. H.G.
0.87 97.5 PtpAffx.13927.1.S1_at CX660204 hypothetical protein - 2e-6 At5g19300 - S.X. H.G.
0.87 97.5 PtpAffx.225048.1.S1_at pmrna44125 hypothetical protein - 2e-1 At1g48980 oxidoreductase S.X. H.G.
0.87 97.5 PtpAffx.220631.1.S1_at pmrna37041 hypothetical protein - 7e-1 At3g46940 deoxyuridine 5'-triphosphate nucleotidohydrolase family S.X. H.G.
0.86 97.4 PtpAffx.216920.1.S1_at pmrna31994 - - 4e-11 At5g15700 DNA-directed RNA polymerase (RPOT2) S.X. H.G.
0.78 95.1 Ptp.7970.1.S1_at DN502791 - - 4e+0 At2g35070 unknown protein S.X. H.G.
0.78 95.1 PtpAffx.7770.1.A1_at CA934754 - - 4e+0 At1g58460 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.7 100.0 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
12.7 99.3 GSM328066 Populus x canescens leaf control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.7 85.5 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.2 79.6 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.1 78.0 GSM328275 Populus x canescens leaf hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.1 78.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.1 78.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
0.7 69.4 GSM328077 Populus x canescens leaf control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 36 PtpAffx.140558.1.A1_at CV253865 hypothetical protein - 4e-1 At5g53045 - C.G. S.X.
0.03 6e-1 34 PtpAffx.56073.1.A1_at CV280502 hypothetical protein - 3e-14 At2g17530 protein kinase family protein C.G. S.X.
0.03 6e-1 34 PtpAffx.56073.2.S1_at AJ775641 hypothetical protein - 6e-22 At2g17530 protein kinase family protein C.G. S.X.
0.00 6e-1 34 PtpAffx.222855.1.S1_at pmrna40538 cytochrome P450 - 2e-5 At3g56630 CYP94D2 C.G. S.X.
0.03 6e-1 34 PtpAffx.214075.1.S1_at pmrna27410 - - 2e-9 At2g26100 galactosyltransferase family protein C.G. S.X.
0.04 6e-1 34 Ptp.7372.1.S1_at BU862660 hypothetical protein - 9e-2 At2g23600 ACL (ACETONE-CYANOHYDRIN LYASE) C.G. S.X.
0.03 6e-1 34 Ptp.4111.2.S1_at CA823916 hypothetical protein - 9e-2 At1g56220 dormancy/auxin associated family protein C.G. S.X.
0.01 3e+0 32 PtpAffx.205698.1.S1_s_at pmrna11252 hypothetical protein - 6e-2 At4g02715 unknown protein C.G. S.X.
0.03 3e+0 32 PtpAffx.18531.1.A1_at CV243468 - - 2e+0 At5g63905 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 32 Arabidopsis thaliana At2g40380 818631 PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO - - - C.G. S.X.
0.05 1e+1 30 Glycine max GmaAffx.66492.1.A1_at AW349357 - - 3e+0 At4g25080 CHLM (magnesium-protoporphyrin IX methyltransferase) C.G. S.X.
0.05 9e-1 32 Hordeum vulgare Contig26557_at Contig26557 - - 8e-1 At5g60490 FLA12 C.G. S.X.
0.04 4e+0 32 Oryza sativa Os06g0658300 9634.m04340 - Hypothetical protein 5e+0 Atcg01080 - C.G. S.X.
0.08 2e+0 32 Triticum aestivum TaAffx.36799.1.S1_at BJ314034 - - 1e+0 At1g72190 oxidoreductase family protein C.G. S.X.
0.04 2e+0 30 Vitis vinifera 1616583_at CF403794 hypothetical protein LOC100266834 - 3e-19 At1g27650 ATU2AF35A C.G. S.X.
0.05 8e-1 32 Zea mays ZmAffx.707.1.A1_at AI738220 transposon protein - 8e-1 At5g03310 auxin-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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