Gene omics information

Query gene ID PtpAffx.99434.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5078.6PtpAffx.99434.1.S1_atCV245843hypothetical protein-6e-31At4g11880AGL14 (agamous-like 14)S.X.H.G.
0.6791.1PtpAffx.208176.1.S1_atpmrna16267hypothetical protein-2e-4At4g14615unknown proteinS.X.H.G.
0.4471.9PtpAffx.217731.1.S1_atpmrna33111hypothetical protein-2e-11At1g78650POLD3S.X.H.G.
0.3357.5Ptp.1834.1.A1_atCV236415hypothetical protein-3e-3At1g25290ATRBL10 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 10)S.X.H.G.
0.2950.5PtpAffx.4470.9.S1_atCV262608--2e-12At1g15270-S.X.H.G.
0.1423.5PtpAffx.101857.1.A1_atCV248457--2e-42Atcg01010-S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.798.6GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
8.198.5GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue series
6.597.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
4.596.1GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.195.5GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.195.5GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue series
3.594.3GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue series
2.892.1GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.791.8GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.691.3GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.613e-169595Ptp.3453.1.S1_atCV243068MIKC mads-box transcription factor-3e-21At4g11880AGL14 (agamous-like 14)C.G.S.X.
0.155e-26119PtpAffx.56981.3.S1_atCV242364MIKC mads-box transcription factor SOC1-4e-23At4g11880AGL14 (agamous-like 14)C.G.S.X.
0.145e-26119Ptp.2554.1.A1_atAF377868.1MIKC mads-box transcription factor PTM5-4e-8At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.193e-24113PtpAffx.56981.1.S1_atBU873015MIKC mads-box transcription factor SOC1-5e-26At4g11880AGL14 (agamous-like 14)C.G.S.X.
0.253e-1893PtpAffx.94889.1.A1_s_atCV267680MIKC mads-box transcription factor-4e+0At3g45050unknown proteinC.G.S.X.
0.103e-1273PtpAffx.92754.1.S1_atCK096310hypothetical protein-6e-10At5g62165AGL42 (AGAMOUS LIKE 42)C.G.S.X.
0.103e-963PtpAffx.42147.1.S1_atDN484014hypothetical protein-3e-8At4g11880AGL14 (agamous-like 14)C.G.S.X.
0.074e-859PtpAffx.207908.1.S1_atpmrna15697hypothetical protein-9e-36At2g03710SEP4 (SEPALLATA 4)C.G.S.X.
0.054e-859Ptp.5993.1.S1_a_atCV246195MIKC mads-box transcription factor-5e-4At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.226e-31135Arabidopsis thalianaAt4g11880826795AGL14 (agamous-like 14)AGL12, AGL14, and AGL17 are all preferentially expressed in root tissues and therefore represent the only characterized MADS box genes expressed in roots.---C.G.S.X.
0.152e-1687Glycine maxGma.16618.1.S1_atBE330897SOC1-4e-12At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.023e+032Hordeum vulgareEBma01_SQ005_G16_atEBma01_SQ005_G16--3e+0At2g01290ribose-5-phosphate isomeraseC.G.S.X.
0.039e-136Oryza sativaOs.49760.1.S1_at---0C.G.S.X.
0.045e-446Triticum aestivumTa.25343.1.A1_atCD374116MADS-box transcription factor TaAGL7-1e-7At2g45660AGL20 (AGAMOUS-LIKE 20)C.G.S.X.
0.081e-756Vitis vinifera1613748_atCD797578AP1-like protein-4e-17At2g03710SEP4 (SEPALLATA 4)C.G.S.X.
0.058e-134Zea maysZmAffx.501.1.S1_atAI691747--8e-1At5g62100ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage