Gene omics information

Query gene ID	PtpAffx.98987.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.98987.1.S1_s_at	DN500449	hypothetical protein	-	1e+0	At5g16453	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.4100.1.A1_a_at	BP930485	hypothetical protein	-	1e-66	At1g43710	emb1075 (embryo defective 1075)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	Ptp.5458.1.S1_s_at	CV261214	hypothetical protein	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.124389.1.S1_at	BU809679	hypothetical protein	-	7e-68	At1g43710	emb1075 (embryo defective 1075)	S.X.	H.G.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.119499.2.A1_s_at	BP930188	hypothetical protein	-	3e-52	At1g10950	endomembrane protein 70, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	Ptp.5458.1.S1_at	CV261214	hypothetical protein	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	96.6	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.3	93.7	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.2	89.3	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	0	1130	PtpAffx.207847.1.S1_at	pmrna15581	hypothetical protein	-	3e-14	At3g19870	binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.56	9e-104	377	PtpAffx.209179.1.S1_at	pmrna18168	-	-	7e-3	At3g19870	binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-3	42	PtpAffx.220996.1.S1_at	pmrna37518	hypothetical protein	-	9e-16	At5g52170	HDG7 (HOMEODOMAIN GLABROUS 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-3	42	PtpAffx.220996.1.S1_s_at	pmrna37518	hypothetical protein	-	9e-16	At5g52170	HDG7 (HOMEODOMAIN GLABROUS 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-3	42	PtpAffx.210747.1.S1_at	pmrna21083	hypothetical protein	-	9e-20	At5g52170	HDG7 (HOMEODOMAIN GLABROUS 7)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.61309.1.A1_at	DN485280	-	-	6e+0	At5g38197	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.225236.1.S1_at	pmrna44429	BED finger-nbs resistance protein	-	1e+0	At4g18501	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.222592.1.S1_s_at	pmrna40122	hypothetical protein	-	2e-1	At1g45150	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.221187.1.S1_at	pmrna37870	hypothetical protein	-	6e-2	At5g42930	triacylglycerol lipase	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g16453	3770636	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.69410.1.S1_at	BQ080249	-	-	1e+0	At1g23060	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig17061_at	Contig17061	-	-	2e+0	At5g27940	WPP3 (WPP domain protein 3)	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os10g0358000	NM_196002.1	-	-	1e+0	At3g12955	auxin-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Triticum aestivum	TaAffx.22685.1.S1_at	CA746554	-	-	2e+0	At3g43290	unknown protein	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1622079_at	CD801631	hypothetical protein LOC100266760	-	1e-6	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.16237.1.A1_at	CF624893	-	-	5e-13	At2g30110	ATUBA1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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