CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.97277.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 80.5 PtpAffx.97277.1.S1_at CV262016 hypothetical protein - 8e-38 At5g51450 RIN3 (RPM1 INTERACTING PROTEIN 3) S.X. H.G.
0.73 93.6 Ptp.1463.3.A1_s_at CV263405 hypothetical protein - 1e-4 At4g19200 proline-rich family protein S.X. H.G.
0.67 91.1 Ptp.3882.1.S1_at CV264407 hypothetical protein - 2e-19 At5g47120 ATBI1 (BAX INHIBITOR 1) S.X. H.G.
0.63 88.1 PtpAffx.145060.1.A1_at CV249802 hypothetical protein - 3e-23 At4g35500 protein kinase family protein S.X. H.G.
0.59 84.9 PtpAffx.13438.1.S1_s_at AI167052 hypothetical protein - 2e-96 At3g28715 H+-transporting two-sector ATPase, putative S.X. H.G.
0.57 84.2 PtpAffx.23209.1.S1_at BP933116 hypothetical protein - 2e-35 At4g22330 ATCES1 S.X. H.G.
0.57 84.2 PtpAffx.43623.2.A1_a_at CV227115 hypothetical protein - 7e-5 At3g03610 phagocytosis and cell motility protein ELMO1-related S.X. H.G.
0.50 78.6 Ptp.6966.1.S1_s_at CV239698 - - 4e-14 At5g14030 translocon-associated protein beta (TRAPB) family protein S.X. H.G.
0.47 74.6 PtpAffx.13792.1.S1_at CV267483 hypothetical protein - 4e-20 At3g49390 CID10 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.3 98.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.8 96.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.9 95.1 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.1 93.2 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 2e-51 204 PtpAffx.79577.1.A1_at CV276939 hypothetical protein - 5e-2 At5g51450 RIN3 (RPM1 INTERACTING PROTEIN 3) C.G. S.X.
0.02 3e-1 38 PtpAffx.220268.1.S1_at pmrna36636 hypothetical protein - 1e+0 At1g27710 glycine-rich protein C.G. S.X.
0.01 3e-1 38 PtpAffx.206391.1.S1_x_at pmrna12701 hypothetical protein - 5e-9 At4g29720 ATPAO5 (Polyamine oxidase 5) C.G. S.X.
0.01 3e-1 38 PtpAffx.206391.1.S1_at pmrna12701 hypothetical protein - 5e-9 At4g29720 ATPAO5 (Polyamine oxidase 5) C.G. S.X.
0.02 3e-1 38 PtpAffx.1574.1.A1_at CV231285 hypothetical protein - 3e-8 At2g20400 myb family transcription factor C.G. S.X.
0.01 3e-1 38 PtpAffx.12750.1.A1_s_at CK106933 hypothetical protein - 9e-10 At4g29720 ATPAO5 (Polyamine oxidase 5) C.G. S.X.
0.01 1e+0 36 PtpAffx.7316.1.S1_at CK091311 hypothetical protein - 5e-1 At2g31920 unknown protein C.G. S.X.
0.02 1e+0 36 PtpAffx.69339.1.A1_at CV260752 hypothetical protein - 3e+0 At4g38710 glycine-rich protein C.G. S.X.
0.01 1e+0 36 PtpAffx.216800.1.S1_at pmrna31819 hypothetical protein - 1e-1 At3g54070 ankyrin repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.24 8e-38 159 Arabidopsis thaliana At5g51450 835219 RIN3 (RPM1 INTERACTING PROTEIN 3) Encodes RING-finger type ubiquitin ligases. - - - C.G. S.X.
0.22 6e-21 103 Glycine max Gma.1454.1.S1_at CD399793 - - 1e-11 At4g25230 RIN2 (RPM1 INTERACTING PROTEIN 2) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare Contig26610_at Contig26610 - - 1e+0 At1g70360 F-box protein-related C.G. S.X.
0.05 1e-1 40 Oryza sativa Os07g0484300 CB662468 - Zn-finger, RING domain containing protein 5e+0 At5g08139 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 1e+1 32 Triticum aestivum TaAffx.98141.1.A1_at BG607866 - - 1e+0 At4g34770 auxin-responsive family protein C.G. S.X.
0.02 9e-1 34 Vitis vinifera 1611834_at CF403331 hypothetical protein LOC100247349 - 3e-4 At2g18190 AAA-type ATPase family protein C.G. S.X.
0.02 2e-2 40 Zea mays Zm.18095.1.S1_at CK985504 - - 4e-1 At3g15760 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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