CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.97116.1.S1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 82.2 PtpAffx.97116.1.S1_at CK099593 hypothetical protein - 1e-13 At3g28690 protein kinase, putative S.X. H.G.
0.35 59.7 Ptp.6305.2.A1_at DN484232 hypothetical protein - 2e-8 At1g55840 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein S.X. H.G.
0.31 53.7 Ptp.7603.1.S1_at DN494879 - - 6e-2 At1g31120 KUP10 S.X. H.G.
0.28 50.5 Ptp.607.1.S1_at CK087237 hypothetical protein - 1e-17 At5g54680 ILR3 (iaa-leucine resistant3) S.X. H.G.
0.19 32.7 Ptp.788.1.S1_at CK089255 hypothetical protein - 2e-38 At4g38240 CGL1 (COMPLEX GLYCAN LESS 1) S.X. H.G.
0.18 30.8 Ptp.6822.1.S1_at DN500216 - - 5e+0 At5g26740 unknown protein S.X. H.G.
0.17 29.1 PtpAffx.32281.1.A1_at CV225439 hypothetical protein - 2e-8 At1g67530 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 97.1 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.7 96.3 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.5 94.3 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.4 94.0 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 0 904 PtpAffx.204085.1.S1_s_at pmrna8063 hypothetical protein - 6e-35 At3g28690 protein kinase, putative C.G. S.X.
0.46 0 904 PtpAffx.204085.1.S1_at pmrna8063 hypothetical protein - 6e-35 At3g28690 protein kinase, putative C.G. S.X.
0.26 5e-54 212 PtpAffx.213907.1.S1_s_at pmrna27117 hypothetical protein - 5e-54 At3g28690 protein kinase, putative C.G. S.X.
0.25 7e-47 188 PtpAffx.204145.1.S1_s_at pmrna8170 hypothetical protein - 5e-97 At3g01300 protein kinase, putative C.G. S.X.
0.11 2e-13 77 PtpAffx.208329.1.S1_at pmrna16559 hypothetical protein - 5e-83 At3g01300 protein kinase, putative C.G. S.X.
0.06 4e-11 69 PtpAffx.127904.1.A1_at CV275311 hypothetical protein - 3e-2 At3g01300 protein kinase, putative C.G. S.X.
0.02 4e-8 59 PtpAffx.207445.1.S1_at pmrna14784 hypothetical protein - 3e-1 At2g05940 protein kinase, putative C.G. S.X.
0.04 3e-6 54 PtpAffx.89364.1.A1_s_at CV235149 hypothetical protein - 6e-31 At5g02800 protein kinase family protein C.G. S.X.
0.04 3e-6 54 PtpAffx.89364.1.A1_at CV235149 - - 6e-31 At5g02800 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-13 77 Arabidopsis thaliana At3g28690 822499 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA - - - C.G. S.X.
0.16 1e-14 81 Glycine max GmaAffx.8472.1.S1_at AW350979 - - 2e-40 At3g01300 protein kinase, putative C.G. S.X.
0.22 1e-18 93 Hordeum vulgare Contig17814_at Contig17814 - - 1e-25 At3g01300 protein kinase, putative C.G. S.X.
0.10 3e-19 97 Oryza sativa Os09g0361100 AK064216.1 - Protein kinase APK1A (EC 2.7.1.-) 1e-70 At5g15080 protein kinase, putative C.G. S.X.
0.07 3e-2 40 Triticum aestivum Ta.12685.1.S1_at CA722001 - - 1e-1 At2g28930 APK1B C.G. S.X.
0.23 9e-43 173 Vitis vinifera 1615314_at CB008162 - - 2e-5 At3g28690 protein kinase, putative C.G. S.X.
0.20 2e-17 89 Zea mays Zm.4078.1.A1_at BM079694 protein kinase APK1A - 6e-16 At3g01300 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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