CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.96160.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.96160.1.S1_at CV245761 - - 3e-2 At3g56480 myosin heavy chain-related S.X. H.G.
0.36 61.6 PtpAffx.204366.1.S1_at pmrna8579 hypothetical protein - 8e-2 At5g09320 VPS9B S.X. H.G.
0.32 55.2 PtpAffx.205895.1.S1_at pmrna11686 hypothetical protein - 1e-9 At1g20830 unknown protein S.X. H.G.
0.31 53.7 Ptp.4539.1.S1_at CV261060 hypothetical protein - 2e-40 At5g45600 GAS41 S.X. H.G.
0.31 53.7 Ptp.3093.1.A1_at CV269713 - - 2e+0 At3g42160 pectinesterase-related S.X. H.G.
0.25 43.6 Ptp.35.1.A1_at CK087896 hypothetical protein - 6e-28 At5g10940 transducin family protein / WD-40 repeat family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 95.8 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7 94.7 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.6 94.5 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
3.6 94.5 GSM244433 Mlp infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.2 93.5 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM244434 Mlp infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM327398 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244436 Mmd infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 1e-94 347 PtpAffx.106982.1.A1_at CV240031 - - 3e-1 At5g52750 heavy-metal-associated domain-containing protein C.G. S.X.
0.26 7e-81 301 PtpAffx.86865.1.A1_at DN486981 hypothetical protein - 2e-2 At3g42310 unknown protein C.G. S.X.
0.05 2e-7 57 PtpAffx.134289.1.A1_at CV240617 - - 2e+0 At5g14360 ubiquitin family protein C.G. S.X.
0.03 7e-7 56 PtpAffx.52652.1.A1_at CA824023 hypothetical protein - 7e-3 At1g69320 CLE10 (CLAVATA3/ESR-RELATED 10) C.G. S.X.
0.03 7e-7 56 PtpAffx.25383.2.A1_at CA823290 hypothetical protein - 2e-15 At3g58040 SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) C.G. S.X.
0.03 3e-6 54 PtpAffx.5499.1.A1_at CV245700 - - 4e-1 At4g22140 DNA binding / protein binding / zinc ion binding C.G. S.X.
0.04 3e-6 54 PtpAffx.5149.2.S1_a_at CV257760 - - 3e-6 At1g79750 ATNADP-ME4 (NADP-malic enzyme 4) C.G. S.X.
0.03 3e-6 54 PtpAffx.3757.3.A1_a_at CV243561 hypothetical protein - 4e-20 At1g76090 SMT3 (STEROL METHYLTRANSFERASE 3) C.G. S.X.
0.03 3e-6 54 PtpAffx.25979.3.S1_at CV243555 - - 8e-15 At4g16630 DEAD/DEAH box helicase, putative (RH28) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 40 Arabidopsis thaliana At3g56480 824815 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPBFV - - - C.G. S.X.
0.05 7e-7 56 Glycine max GmaAffx.34039.1.A1_at CD408864 - - 7e-1 At4g08640 ATP binding / protein binding C.G. S.X.
0.04 9e-7 54 Hordeum vulgare Contig11800_at Contig11800 - - 4e-1 At1g55265 unknown protein C.G. S.X.
0.03 4e-3 44 Oryza sativa Os05g0202800 AF009959.1 - Plant metallothionein, family 15 protein 3e-7 At3g15353 MT3 (METALLOTHIONEIN 3) C.G. S.X.
0.05 2e-6 54 Triticum aestivum TaAffx.80736.1.S1_at CA693340 - - 5e-1 At1g12244 DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase C.G. S.X.
0.04 9e-9 59 Vitis vinifera 1614844_at CB005866 - - 1e-3 At1g11790 ADT1 (arogenate dehydratase 1) C.G. S.X.
0.04 3e-6 52 Zea mays Zm.14917.1.A1_at BM378490 - - 9e-1 At1g04330 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage