Gene omics information

Query gene ID	PtpAffx.95850.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.47	74.6	PtpAffx.95850.1.A1_at	CV230444	hypothetical protein	-	4e-1	At5g25560	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.224715.1.S1_s_at	pmrna43527	hypothetical protein	-	4e-25	At1g11300	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.160277.1.A1_at	CV262870	hypothetical protein	-	3e+0	At4g27930	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.212465.1.S1_at	pmrna24423	hypothetical protein	-	2e+0	At5g35945	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.214372.1.S1_at	pmrna27964	hypothetical protein	-	2e+0	At3g28140	calmodulin-binding protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.63756.2.S1_at	CV274245	-	-	3e-1	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.4	100.0	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.9	97.4	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.7	96.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.2	95.6	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.3	81.0	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.1	78.0	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1447	PtpAffx.95850.1.A1_s_at	CV230444	hypothetical protein	-	4e-1	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.11	2e-34	147	Ptp.3915.2.S1_a_at	CX170378	hypothetical protein	-	5e-9	At5g22920	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	4e-14	79	PtpAffx.23842.1.S1_a_at	CV265597	hypothetical protein	-	1e-27	At5g22920	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	3e-2	40	PtpAffx.146951.1.A1_at	CV254547	-	-	4e-22	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.5291.2.S1_at	BU863309	hypothetical protein	-	2e-29	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.207098.1.S1_at	pmrna14071	hypothetical protein	-	3e-27	At5g10350	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.201324.1.S1_at	pmrna2626	hypothetical protein	-	2e-17	At1g53210	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	PtpAffx.17106.1.S1_s_at	CX183992	hypothetical protein	-	3e-60	At5g65260	polyadenylate-binding protein family protein / PABP family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	5e-1	36	Ptp.6513.1.S1_at	CK093068	hypothetical protein	-	2e-12	At3g58600	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-1	36	Arabidopsis thaliana	At5g25560	832631	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-6	54	Glycine max	Gma.3963.2.S1_at	BE608192	-	-	6e-30	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEf0002A21r2_at	HVSMEf0002A21r2	-	-	4e+0	At1g79790	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.06	3e-12	73	Oryza sativa	OsAffx.12738.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Triticum aestivum	Ta.25841.1.A1_at	CD453606	-	-	1e+0	At1g61093	unknown protein	C.G.	S.X.	Please select
0.03	5e-7	54	Vitis vinifera	1621565_s_at	CF516181	hypothetical protein LOC100252623	-	5e-70	At5g25560	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.06	7e-7	54	Zea mays	Zm.9021.1.S1_at	CO533021	hypothetical protein LOC100192978	-	8e-4	At5g22920	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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