Gene omics information

Query gene ID	PtpAffx.95698.1.A1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.2	PtpAffx.95698.1.A1_s_at	CV235344	hypothetical protein	-	2e-8	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.213599.1.S1_at	pmrna26557	hypothetical protein	-	4e-12	At2g38025	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.207374.1.S1_at	pmrna14628	hypothetical protein	-	4e-82	At5g66470	GTP binding / RNA binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.153857.1.A1_at	CV239742	-	-	2e-5	At3g47450	NOA1 (NO ASSOCIATED 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.940.2.A1_a_at	BU888823	hypothetical protein	-	2e-27	At2g02740	WHY3 (WHIRLY 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.211806.1.S1_at	pmrna23151	hypothetical protein	-	2e-37	At2g48120	PAC (PALE CRESS)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	96.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.5	94.3	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	9e-98	357	Ptp.2968.1.A1_at	BP933737	hypothetical protein	-	1e-5	At1g06190	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-6	52	PtpAffx.210460.1.S1_at	pmrna20538	hypothetical protein	-	1e-4	At4g01050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-6	52	PtpAffx.206193.1.S1_s_at	pmrna12300	hypothetical protein	-	2e+0	At2g24060	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-6	52	PtpAffx.206193.1.S1_at	pmrna12300	hypothetical protein	-	2e+0	At2g24060	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.05	3e-5	50	PtpAffx.207591.1.S1_x_at	pmrna15065	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-5	50	PtpAffx.207593.1.S1_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	3e-5	50	PtpAffx.207593.1.S1_x_at	pmrna15069	hypothetical protein	-	2e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-3	42	Ptp.67.1.S1_at	CV247130	-	-	1e-33	At5g51700	PBS2 (PPHB SUSCEPTIBLE 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e-3	42	Ptp.4421.1.A1_s_at	AY665681.1	polyphenol oxidase /// polyphenol oxidase /// polyphenol oxidase	-	4e+0	At4g17590	-	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-8	59	Arabidopsis thaliana	At1g06190	837128	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:chloroplast;OMFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.65615.1.S1_at	CA801706	-	-	2e+0	At3g58700	60S ribosomal protein L11 (RPL11B)	C.G.	S.X.	Please select
0.03	2e-4	46	Hordeum vulgare	Contig10874_at	Contig10874	-	-	1e-1	At1g76750	unknown protein	C.G.	S.X.	Please select
0.04	9e-3	42	Oryza sativa	Os10g0450900	AK064065.1	-	Glycine-rich cell wall structural protein 2precursor	2e+0	At3g23140	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-4	46	Triticum aestivum	TaAffx.91793.1.S1_at	BJ308355	-	-	3e+0	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	C.G.	S.X.	Please select
0.12	2e-5	48	Vitis vinifera	1618888_at	CF404600	hypothetical protein LOC100261778	-	1e+0	At5g46020	unknown protein	C.G.	S.X.	Please select
0.04	8e-6	50	Zea mays	Zm.3566.1.A1_at	BG873859	-	-	1e+0	At3g23140	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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