CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.95687.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.95687.1.A1_at DN496546 hypothetical protein - 4e-4 At2g25010 unknown protein S.X. H.G.
0.55 82.2 PtpAffx.93043.1.S1_at CX178086 hypothetical protein - 4e-4 At1g29800 phosphoinositide binding / zinc ion binding S.X. H.G.
0.50 78.6 PtpAffx.72383.1.S1_at BU888356 - - 2e+0 At4g24265 unknown protein S.X. H.G.
0.43 69.7 Ptp.4562.1.S1_s_at CV261348 hypothetical protein - 1e-20 At5g65940 CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) S.X. H.G.
0.40 67.0 PtpAffx.66783.1.S1_at BU817255 hypothetical protein - 4e-6 At5g09860 nuclear matrix protein-related S.X. H.G.
0.40 67.0 PtpAffx.210621.1.S1_s_at pmrna20833 histone acetyltransferase /// histone acetyltransferase - 0 At5g50320 ELO3 (ELONGATA 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 93.2 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5 90.9 GSM328565 Populus x canescens root hypoxia_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.3 89.8 GSM244440 Mixed infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1 88.6 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.0 88.0 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-6 54 PtpAffx.202460.1.S1_at pmrna4926 hypothetical protein - 1e-39 At2g04865 unknown protein C.G. S.X.
0.14 2e-6 54 PtpAffx.202460.1.S1_s_at pmrna4926 hypothetical protein - 1e-39 At2g04865 unknown protein C.G. S.X.
0.11 4e-5 50 PtpAffx.211907.1.S1_at pmrna23389 hypothetical protein - 6e-66 At2g04865 unknown protein C.G. S.X.
0.02 6e-1 36 PtpAffx.11683.1.A1_at CK093713 hypothetical protein - 1e-13 At4g30200 - C.G. S.X.
0.03 2e+0 34 PtpAffx.6777.1.S1_at CK115597 - - 1e+0 At5g38610 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 2e+0 34 PtpAffx.6033.2.S1_at BU889316 histone deacetylase - 9e-55 At4g38130 HD1 (HISTONE DEACETYLASE 1) C.G. S.X.
0.03 2e+0 34 PtpAffx.213912.1.S1_at pmrna27125 AP2 domain-containing transcription factor - 1e-3 At1g72570 DNA binding / transcription factor C.G. S.X.
0.01 2e+0 34 PtpAffx.210859.1.S1_at pmrna21325 histidine kinase cytokinin receptor - 4e-7 At2g47430 CKI1 (CYTOKININ-INDEPENDENT 1) C.G. S.X.
0.01 2e+0 34 PtpAffx.210538.1.S1_at pmrna20659 hypothetical protein - 1e-33 At1g18990 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-4 46 Arabidopsis thaliana At2g25010 817040 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P - - - C.G. S.X.
0.03 9e+0 32 Glycine max GmaAffx.81303.1.S1_at BF067759 - - 2e-1 At3g06550 - C.G. S.X.
0.02 5e-2 38 Hordeum vulgare Contig18561_at Contig18561 - - 2e+0 At4g13160 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa Os05g0234400 9633.m01264 - - 1e+0 At1g06380 ribosomal protein-related C.G. S.X.
0.02 7e+0 32 Triticum aestivum Ta.9789.3.S1_at CA735187 - - 4e-40 At1g02130 ARA-5 (ARABIDOPSIS RAS 5) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1615337_at CF405202 hypothetical protein LOC100264826 - 1e+0 At2g44195 unknown protein C.G. S.X.
0.02 3e+0 32 Zea mays ZmAffx.750.1.A1_at AI677184 hypothetical protein LOC100275058 - 9e-1 At5g16200 50S ribosomal protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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