Gene omics information

Query gene ID	PtpAffx.95587.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.95587.1.A1_at	CV240701	hypothetical protein	-	1e+0	At5g53280	PDV1 (PLASTID DIVISION1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.219974.1.S1_at	pmrna36177	hypothetical protein	-	2e-3	At2g45040	matrix metalloproteinase	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.953.2.A1_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.8582.1.S1_at	CV262556	-	-	2e-1	At1g19310	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.213042.1.S1_at	pmrna25523	hypothetical protein	-	7e-15	At5g51780	basix helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.84979.1.S1_at	CV254755	hypothetical protein	-	2e-4	At5g06720	peroxidase, putative	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.6	99.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
24.3	99.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
13.5	99.4	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
9.1	98.7	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.2	96.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.2	79.6	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
1.1	78.0	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.9	74.2	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
0.9	74.2	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.74	0	634	Ptp.4575.1.S1_at	BI125740	hypothetical protein	-	5e+0	At3g44171	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.30	2e-45	182	PtpAffx.3988.1.A1_at	CV236827	hypothetical protein	-	2e-16	At5g63970	copine-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.210877.1.S1_at	pmrna21358	hypothetical protein	-	1e-15	At1g56230	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	34	PtpAffx.209473.1.S1_at	pmrna18787	hypothetical protein	-	8e-48	At5g49830	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.202989.1.S1_s_at	pmrna5912	SAUR family protein	-	1e+0	At4g16810	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e+0	34	PtpAffx.1041.4.S1_a_at	CV242419	hypothetical protein	-	1e-22	At5g49830	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	32	PtpAffx.225354.1.S1_x_at	pmrna44650	hypothetical protein	-	4e+0	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	6e+0	32	PtpAffx.210603.1.S1_at	pmrna20801	hypothetical protein	-	4e-1	At3g05660	AtRLP33 (Receptor Like Protein 33)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e+0	32	PtpAffx.138344.1.S1_at	BU876572	-	-	8e-1	At3g03490	PEX19-1 (peroxin 19-1)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g53280	835409	PDV1 (PLASTID DIVISION1)	An integral outer envelope membrane protein (as its homolog PDV2), component of the plastid division machinery. Similar to ARC5, PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-2	40	Glycine max	Gma.3709.1.S1_at	BU764176	-	-	7e-5	At5g63970	copine-related	C.G.	S.X.	Please select
0.03	8e+0	30	Hordeum vulgare	Contig8401_at	Contig8401	casein kinase II alpha	-	7e-103	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	C.G.	S.X.	Please select
0.04	8e+0	32	Oryza sativa	Os11g0417066	9633.m02265	-	-	1e-1	At5g22930	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+1	30	Triticum aestivum	TaAffx.86317.1.S1_at	CA611222	-	-	6e-7	At4g27745	-	C.G.	S.X.	Please select
0.11	1e-9	61	Vitis vinifera	1608104_at	CF403143	hypothetical protein LOC100249896	-	1e+0	At3g46640	PCL1 (PHYTOCLOCK 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.17731.1.S1_at	CK370453	-	-	2e+0	At5g51760	AHG1 (ABA-hypersensitive germination 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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