CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.95500.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 71.9 PtpAffx.95500.1.A1_at CV243681 - - 1e+0 At5g38140 NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12) S.X. H.G.
0.67 91.1 PtpAffx.224082.1.S1_x_at pmrna42319 hypothetical protein - 1e-2 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) S.X. H.G.
0.67 91.1 PtpAffx.88903.1.A1_at CV247217 hypothetical protein - 9e-1 At2g01770 VIT1 (vacuolar iron transporter 1) S.X. H.G.
0.60 86.0 PtpAffx.217474.1.S1_at pmrna32753 hypothetical protein - 7e+0 At3g18295 unknown protein S.X. H.G.
0.40 67.0 Ptp.3190.3.A1_at CV229036 - - 7e-1 At1g50930 unknown protein S.X. H.G.
0.39 64.6 PtpAffx.213520.1.S1_at pmrna26425 hypothetical protein - 5e+0 At5g64470 unknown protein S.X. H.G.
0.36 61.6 Ptp.2652.1.A1_at CV251557 hypothetical protein - 2e-9 At2g46540 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.2 100.0 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM362886 Clone1979_LPI2_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.4 95.9 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.3 93.7 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM244441 Mixed infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.6 84.5 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.67 1e-133 476 PtpAffx.32386.3.A1_at CV256757 hypothetical protein - 8e-2 At3g55770 LIM domain-containing protein C.G. S.X.
0.24 4e-41 169 PtpAffx.32386.1.A1_a_at CV245577 hypothetical protein - 8e-3 At1g01780 LIM domain-containing protein C.G. S.X.
0.18 7e-15 81 PtpAffx.32386.2.A1_at CV245660 hypothetical protein - 1e-1 At1g01780 LIM domain-containing protein C.G. S.X.
0.02 2e+0 34 PtpAffx.28701.1.S1_at CV266295 hypothetical protein - 2e-13 At5g01520 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e+0 34 PtpAffx.28701.2.S1_s_at BU867887 hypothetical protein - 1e-13 At5g01520 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.214773.1.S1_at pmrna28615 hypothetical protein - 3e-1 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) C.G. S.X.
0.02 2e+0 34 PtpAffx.213622.1.S1_at pmrna26602 hypothetical protein - 3e-18 At5g58787 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 6e+0 32 PtpAffx.96651.1.S1_at CN520723 hypothetical protein - 2e-3 At3g23730 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative C.G. S.X.
0.02 6e+0 32 PtpAffx.62942.1.A1_at CV260558 hypothetical protein - 1e-32 At1g30540 ATPase, BadF/BadG/BcrA/BcrD-type family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g38140 833794 NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO - - - C.G. S.X.
0.13 7e-12 71 Glycine max GmaAffx.77056.1.S1_at BG046852 - - 1e-6 At3g55770 LIM domain-containing protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HY10H19u_s_at HY10H19u - - 5e+0 At5g54740 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 9e+0 32 Oryza sativa Os04g0367201 9632.m02830 - - 1e-1 At1g70590 F-box family protein C.G. S.X.
0.05 1e+0 34 Triticum aestivum Ta.11019.1.A1_at BQ168388 - - 3e-1 At5g14530 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.07 4e-4 44 Vitis vinifera 1613036_at CB980253 hypothetical protein LOC100260380 - 2e-3 At1g10200 WLIM1 C.G. S.X.
0.03 5e-1 34 Zea mays Zm.10256.1.A1_at BQ547595 - - 5e-1 At4g31115 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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