Gene omics information

Query gene ID	PtpAffx.953.3.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.62	87.2	PtpAffx.953.3.S1_at	CA825166	-	-	1e+0	At1g74620	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.39799.1.A1_at	CV228717	hypothetical protein	-	6e-1	At5g19810	proline-rich extensin-like family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.210935.1.S1_at	pmrna21488	hypothetical protein	-	1e-5	At3g05400	sugar transporter, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.225830.1.S1_at	pmrna45443	hypothetical protein	-	5e-4	At1g78320	ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)	S.X.	H.G.	Please selecteFP Browser (expression)
0.58	84.2	PtpAffx.213042.1.S1_at	pmrna25523	hypothetical protein	-	7e-15	At5g51780	basix helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.82382.1.A1_at	CV262006	hypothetical protein	-	3e-2	At2g31940	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.114935.1.A1_at	CV240866	hypothetical protein	-	2e-2	At3g46620	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.149510.2.S1_at	CA821947	-	-	7e+0	At2g47360	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.95587.1.A1_at	CV240701	hypothetical protein	-	1e+0	At5g53280	PDV1 (PLASTID DIVISION1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.219974.1.S1_at	pmrna36177	hypothetical protein	-	2e-3	At2g45040	matrix metalloproteinase	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.7	99.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
16.1	99.6	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
11.3	99.2	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.0	98.7	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
5.3	96.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.6	96.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327281	Populus balsamifera_20071015_Seedling_continuous_light_6d_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	6e-59	228	PtpAffx.953.2.A1_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.52	6e-59	228	PtpAffx.953.2.A1_a_at	CV276105	-	-	1e+0	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	1e-32	141	PtpAffx.218377.1.S1_s_at	pmrna33971	hypothetical protein	-	9e+0	At5g07475	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.28	1e-32	141	PtpAffx.218377.1.S1_at	pmrna33971	hypothetical protein	-	9e+0	At5g07475	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.29	9e-27	121	PtpAffx.81779.1.A1_at	CV273589	-	-	4e-1	At4g03320	tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	1e-22	107	PtpAffx.218375.1.S1_at	pmrna33969	-	-	3e-1	At4g29470	phospholipase A2, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	1e-22	107	PtpAffx.218375.1.S1_x_at	pmrna33969	hypothetical protein	-	3e-1	At4g29470	phospholipase A2, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	7e-6	52	PtpAffx.153422.1.A1_at	CV257794	-	-	2e-1	At3g22240	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	4e-1	36	PtpAffx.217865.1.S1_at	pmrna33296	hypothetical protein	-	6e-48	At1g78770	cell division cycle family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g74620	843801	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.10488.1.A1_at	BU544814	-	-	3e+0	At1g62370	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	Contig26522_at	Contig26522	-	-	8e-2	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	Os.14189.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Triticum aestivum	TaAffx.107296.1.S1_at	CA702694	-	-	4e+0	At3g24310	MYB305 (myb domain protein 305)	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1618352_at	CA817744	hypothetical protein LOC100255155	-	2e-8	At3g52040	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	30	Zea mays	ZmAffx.1128.1.A1_at	AW330583	-	-	8e-7	At4g24800	MA3 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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