CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.953.2.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.953.2.A1_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein S.X. H.G.
0.61 87.0 PtpAffx.203014.1.S1_at pmrna5962 hypothetical protein - 5e+0 At4g13965 - S.X. H.G.
0.46 73.7 PtpAffx.95587.1.A1_at CV240701 hypothetical protein - 1e+0 At5g53280 PDV1 (PLASTID DIVISION1) S.X. H.G.
0.38 63.7 PtpAffx.219974.1.S1_at pmrna36177 hypothetical protein - 2e-3 At2g45040 matrix metalloproteinase S.X. H.G.
0.36 61.6 PtpAffx.84979.1.S1_at CV254755 hypothetical protein - 2e-4 At5g06720 peroxidase, putative S.X. H.G.
0.30 52.0 PtpAffx.75804.1.A1_at CV256857 hypothetical protein - 7e-6 At2g36750 UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
48.6 100.0 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
15.4 99.5 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
14.9 99.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.4 98.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
5.7 97.3 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
0.6 66.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
0.5 63.3 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
0.2 49.7 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.2 49.7 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
0.1 42.9 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.90 0 735 PtpAffx.953.2.A1_a_at CV276105 - - 1e+0 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.52 5e-59 228 PtpAffx.953.3.S1_at CA825166 - - 1e+0 At1g74620 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.27 2e-42 173 PtpAffx.218377.1.S1_s_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein C.G. S.X.
0.27 2e-42 173 PtpAffx.218377.1.S1_at pmrna33971 hypothetical protein - 9e+0 At5g07475 plastocyanin-like domain-containing protein C.G. S.X.
0.37 1e-31 137 PtpAffx.81779.1.A1_at CV273589 - - 4e-1 At4g03320 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) C.G. S.X.
0.33 3e-26 119 PtpAffx.218375.1.S1_at pmrna33969 - - 3e-1 At4g29470 phospholipase A2, putative C.G. S.X.
0.33 3e-26 119 PtpAffx.218375.1.S1_x_at pmrna33969 hypothetical protein - 3e-1 At4g29470 phospholipase A2, putative C.G. S.X.
0.11 1e-10 67 PtpAffx.153422.1.A1_at CV257794 - - 2e-1 At3g22240 unknown protein C.G. S.X.
0.04 9e-2 38 PtpAffx.21946.1.A1_a_at CV274757 hypothetical protein - 9e-1 At3g06360 AGP27 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At4g21580 828243 oxidoreductase, zinc-binding dehydrogenase family protein F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOFMPA - - - C.G. S.X.
0.04 4e-1 36 Glycine max Gma.7129.1.S1_at BU764262 - - 1e+0 At2g20620 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig24614_at Contig24614 - - 6e-2 At1g47970 unknown protein C.G. S.X.
0.02 8e+0 32 Oryza sativa Os05g0478400 9633.m03736 - - 5e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.57732.1.S1_at CA625508 - - 1e+1 At5g53895 unknown protein C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1618018_at CF403362 hypothetical protein LOC100257171 - 4e+0 At4g21570 unknown protein C.G. S.X.
0.03 7e+0 30 Zea mays Zm.17498.1.A1_at CK144816 hypothetical protein LOC100279562 - 1e+0 At5g62430 CDF1 (CYCLING DOF FACTOR 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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