CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.95281.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.95281.1.A1_at CV254077 - - 2e+0 At5g52690 heavy-metal-associated domain-containing protein S.X. H.G.
0.29 50.5 PtpAffx.13823.1.S1_a_at CK095337 - - 3e-1 At2g12190 cytochrome P450, putative S.X. H.G.
0.08 12.9 PtpAffx.8674.4.S1_at CV233756 hypothetical protein - 5e-7 At2g33510 protein binding S.X. H.G.
0.03 5.2 PtpAffx.123212.1.S1_at CF236190 hypothetical protein - 5e-34 At4g01400 - S.X. H.G.
0.02 3.6 Ptp.2654.1.S1_s_at CV244756 hypothetical protein - 1e-79 At3g01120 MTO1 (METHIONINE OVERACCUMULATION 1) S.X. H.G.
0.01 2.2 Ptp.2620.1.S1_at CV257022 hypothetical protein - 2e-81 At1g30890 integral membrane HRF1 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.2 97.6 GSM372042 Clone1979_LPI5_N-_8w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.6 96.2 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.2 95.6 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM372043 Clone1979_LPI5_N-_8w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9 92.5 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.7 91.8 GSM372093 Clone3200_LPI5_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 5e-29 129 PtpAffx.104717.1.S1_at DN488329 - - 2e+0 At4g01023 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 3e-2 40 PtpAffx.32256.2.A1_at CV283180 hypothetical protein - 1e-4 At5g18840 sugar transporter, putative C.G. S.X.
0.01 5e-1 36 PtpAffx.3561.1.S1_at CV279910 - - 2e-11 At4g37080 unknown protein C.G. S.X.
0.03 5e-1 36 PtpAffx.22948.1.S1_at CX655388 beta-ketoacyl-coa synthase family protein - 2e-5 At1g07720 KCS3 (3-KETOACYL-COA SYNTHASE 3) C.G. S.X.
0.02 2e+0 34 PtpAffx.878.5.S1_a_at BU866449 hypothetical protein - 5e-7 At1g79330 ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5) C.G. S.X.
0.02 2e+0 34 PtpAffx.30516.1.A1_at CV272677 hypothetical protein - 4e-1 At5g04510 PDK1 (3'-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) C.G. S.X.
0.02 2e+0 34 PtpAffx.3070.1.A1_at CV277508 hypothetical protein - 2e-21 At4g05090 inositol monophosphatase family protein C.G. S.X.
0.01 2e+0 34 PtpAffx.2329.1.S1_at CV253692 - - 8e-97 At1g54270 EIF4A-2 C.G. S.X.
0.02 2e+0 34 PtpAffx.221548.1.S1_a_at pmrna38485 hypothetical protein - 6e-1 At1g74520 ATHVA22A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At5g52690 835346 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max Gma.4497.1.A1_at BE657853 - - 3e+0 At5g05640 nucleoprotein-related C.G. S.X.
0.03 1e+1 30 Hordeum vulgare HVSMEi0016B10r2_at HVSMEi0016B10r2 - - 1e-1 At2g25500 - C.G. S.X.
0.02 3e+0 34 Oryza sativa Os07g0292800 AK073670.1 - Ribosomal protein L24E family protein 1e-1 At2g44860 60S ribosomal protein L24, putative C.G. S.X.
0.03 6e+0 32 Triticum aestivum Ta.25582.3.S1_a_at CA721040 - - 3e+0 At3g10580 myb family transcription factor C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1610355_at CB344032 - - 9e-1 At1g10970 ZIP4 (ZINC TRANSPORTER 4 PRECURSOR) C.G. S.X.
0.03 1e+1 30 Zea mays ZmAffx.271.1.A1_at AI670399 - - 1e+1 At5g09430 hydrolase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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