Gene omics information

Query gene ID PtpAffx.9494.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6791.1PtpAffx.9494.1.S1_atDN491329hypothetical protein-1e-26At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)S.X.H.G.
0.7393.6Ptp.7847.1.S1_s_atCN523919hypothetical protein-4e-7At3g22680unknown proteinS.X.H.G.
0.5582.2PtpAffx.24605.1.S1_a_atCV253990hypothetical protein-3e-32At5g53060KH domain-containing proteinS.X.H.G.
0.4875.4PtpAffx.204884.1.S1_x_atpmrna9650hypothetical protein-1e-38At1g51450SPla/RYanodine receptor (SPRY) domain-containing proteinS.X.H.G.
0.3357.5PtpAffx.200343.1.S1_s_atpmrna678hypothetical protein-1e-64At4g10760MTA (MRNA ADENOSINE METHYLASE)S.X.H.G.
0.3255.2Ptp.7848.1.A1_s_atCV271937hypothetical protein-3e-12At3g04610FLK (flowering locus KH domain)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
5.196.8GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.495.9GSM372091Clone3200_LPI2_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.193.2GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue series
2.892.1GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
2.691.3GSM362884Clone1979_LPI2_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.590.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
2.590.9GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.389.8GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.389.8GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.289.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue series
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.8901063PtpAffx.9494.1.S1_a_atDN491329hypothetical protein-1e-26At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
0.722e-143510PtpAffx.9494.2.S1_atCV257622--3e-21At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
0.123e-344PtpAffx.5498.1.A1_atCV234927--3e-18At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)C.G.S.X.
0.014e-240PtpAffx.222133.1.S1_x_atpmrna39364cc-nbs-lrr resistance protein-7e-2At4g18580unknown proteinC.G.S.X.
0.024e-240PtpAffx.221580.1.S1_atpmrna38535cc-nbs resistance protein-3e+0At5g55140ribosomal protein L30 family proteinC.G.S.X.
0.024e-240PtpAffx.219381.1.S1_atpmrna35294hypothetical protein-2e+0At5g13780GCN5-related N-acetyltransferase, putativeC.G.S.X.
0.014e-240PtpAffx.214247.1.S1_atpmrna27718cc-nbs-lrr resistance protein-3e-1At4g19570DNAJ heat shock N-terminal domain-containing proteinC.G.S.X.
0.012e-138PtpAffx.202755.1.S1_atpmrna5497hypothetical protein-4e-1At4g06634zinc finger (C2H2 type) family proteinC.G.S.X.
0.152e-138Ptp.6781.1.S1_s_atBU832419hypothetical protein-5e-23At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.351e-26121Arabidopsis thalianaAt2g30260817576U2B'' (U2 small nuclear ribonucleoprotein B)encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.---C.G.S.X.
0.309e-22105Glycine maxGmaAffx.58650.1.S1_atBE021790--3e-28At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeC.G.S.X.
0.127e-1477Hordeum vulgareContig7570_atContig7570--1e-7At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeC.G.S.X.
0.144e-1273Oryza sativaOs.12051.1.S1_at---0C.G.S.X.
0.164e-1789Triticum aestivumTa.9408.1.S1_atBJ309615--2e-4At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeC.G.S.X.
0.217e-50196Vitis vinifera1621155_atBQ794745hypothetical protein LOC100248478-8e-34At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
0.076e-1787Zea maysZm.16475.2.S1_atCK371021--2e-7At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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