CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.9411.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 78.6 PtpAffx.9411.1.A1_at BP934185 hypothetical protein - 5e-9 At2g39550 PGGT-I S.X. H.G.
0.75 94.1 Ptp.4391.2.A1_s_at CV229557 hypothetical protein - 3e-14 At1g32400 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) S.X. H.G.
0.71 92.6 PtpAffx.7924.1.S1_at CV263522 hypothetical protein - 8e-6 At5g62930 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.61 87.0 PtpAffx.144134.1.S1_at CV241139 hypothetical protein - 5e-17 At5g61240 protein binding S.X. H.G.
0.59 84.9 Ptp.4696.1.S1_s_at CK089480 hypothetical protein - 4e-11 At3g63460 WD-40 repeat family protein S.X. H.G.
0.57 84.2 PtpAffx.5277.2.A1_a_at CV254923 hypothetical protein - 2e-21 At1g16900 sugar binding / transferase, transferring glycosyl groups S.X. H.G.
0.50 78.6 PtpAffx.9003.1.A1_s_at CK091604 hypothetical protein - 2e+0 At5g10000 ATFD4 (ferredoxin 4) S.X. H.G.
0.48 75.4 PtpAffx.87139.1.A1_at BP933283 hypothetical protein - 9e-6 At1g35470 SPla/RYanodine receptor (SPRY) domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.4 98.8 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
7.6 98.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.5 90.9 GSM372091 Clone3200_LPI2_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4 90.4 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.2 89.3 GSM362885 Clone1979_LPI2_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0 88.0 GSM372092 Clone3200_LPI2_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9 87.2 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM372089 Clone3200_LPI2_N+_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.7 85.5 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-22 107 PtpAffx.219349.1.S1_at pmrna35242 hypothetical protein - 6e-10 At2g39550 PGGT-I C.G. S.X.
0.02 4e-1 36 PtpAffx.3918.1.A1_at CV262306 hypothetical protein - 3e+0 At4g21570 unknown protein C.G. S.X.
0.02 4e-1 36 PtpAffx.215091.1.S1_at pmrna29066 hypothetical protein - 9e+0 At2g46800 ZAT (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA) C.G. S.X.
0.02 4e-1 36 PtpAffx.107834.1.A1_at CV260638 - - 2e+0 At5g19230 unknown protein C.G. S.X.
0.02 4e-1 36 Ptp.3629.1.S1_at DN492509 hypothetical protein - 1e-20 At2g02590 - C.G. S.X.
0.02 2e+0 34 PtpAffx.5244.1.S1_a_at CV256118 hypothetical protein - 4e-98 At4g21800 QQT2 (quatre-quart2) C.G. S.X.
0.02 2e+0 34 PtpAffx.5244.1.S1_at CV256118 hypothetical protein - 4e-98 At4g21800 QQT2 (quatre-quart2) C.G. S.X.
0.03 2e+0 34 PtpAffx.218670.1.S1_at pmrna34374 hypothetical protein - 2e-2 At3g06890 unknown protein C.G. S.X.
0.01 2e+0 34 PtpAffx.204904.1.S1_at pmrna9695 hypothetical protein - 4e-4 At1g07200 ATP-dependent Clp protease ClpB protein-related C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 5e-9 61 Arabidopsis thaliana At2g39550 818540 PGGT-I encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. - - - C.G. S.X.
0.08 7e-6 52 Glycine max GmaAffx.6412.1.S1_at AW349831 - - 2e-2 At2g42460 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig14029_at Contig14029 - - 2e-6 At5g57360 ZTL (ZEITLUPE) C.G. S.X.
0.04 9e+0 32 Oryza sativa OsAffx.29362.3.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.50589.1.S1_at CA738268 - - 5e+0 At2g15325 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.14 4e-13 73 Vitis vinifera 1611196_at CF212936 hypothetical protein LOC100241042 - 7e-11 At2g39550 PGGT-I C.G. S.X.
0.04 5e-1 34 Zea mays ZmAffx.590.1.A1_at AI715018 - - 1e+1 At5g06043 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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