Gene omics information

Query gene ID	PtpAffx.93043.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	96.0	PtpAffx.93043.1.S1_at	CX178086	hypothetical protein	-	4e-4	At1g29800	phosphoinositide binding / zinc ion binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.72383.1.S1_at	BU888356	-	-	2e+0	At4g24265	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.71	92.6	Ptp.4562.1.S1_s_at	CV261348	hypothetical protein	-	1e-20	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.56	83.9	PtpAffx.95687.1.A1_at	DN496546	hypothetical protein	-	4e-4	At2g25010	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	94.5	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5	94.3	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5	94.3	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.4	90.4	GSM244434	Mlp infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-13	77	PtpAffx.203809.1.S1_at	pmrna7529	hypothetical protein	-	7e-44	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.12	2e-3	44	PtpAffx.209879.1.S1_at	pmrna19463	hypothetical protein	-	3e-49	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.93131.1.S1_at	DN497171	-	-	3e-26	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.7740.1.S1_at	CV270504	hypothetical protein	-	4e-6	At4g30470	cinnamoyl-CoA reductase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.207249.1.S1_at	pmrna14365	hypothetical protein	-	4e-42	At4g35880	aspartyl protease family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.205246.1.S1_at	pmrna10395	hypothetical protein	-	8e-20	At3g07610	IBM1 (increase in bonsai methylation 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.14425.1.S1_a_at	CV258584	hypothetical protein	-	7e-26	At4g14030	SBP1 (selenium-binding protein 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.14425.1.S1_at	CV258584	hypothetical protein	-	7e-26	At4g14030	SBP1 (selenium-binding protein 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.12950.1.A1_at	CV253538	hypothetical protein	-	6e+0	At4g18070	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-4	46	Arabidopsis thaliana	At1g29800	839858	phosphoinositide binding / zinc ion binding	F:phosphoinositide binding, zinc ion binding;P:signal transduction;C:unknown;MFOPBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	1e-4	48	Glycine max	GmaAffx.72778.1.S1_at	BM142728	-	-	4e-1	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please select
0.03	7e-1	34	Hordeum vulgare	HK03P19r_s_at	HK03P19r	-	-	4e+0	At3g23380	RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5)	C.G.	S.X.	Please select
0.03	1e-2	42	Oryza sativa	Os06g0552400	AK121387.1	-	Protein of unknown function DUF500 family protein	7e-5	At1g29800	phosphoinositide binding / zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	Ta.7445.1.S1_x_at	CK168632	-	-	6e+0	At4g07825	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Vitis vinifera	1614056_at	CB983124	-	-	6e-2	At5g28090	unknown protein	C.G.	S.X.	Please select
0.04	6e-1	34	Zea mays	Zm.14089.1.S1_at	AW324724	hypothetical protein LOC100193909	-	4e-5	At5g48640	cyclin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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