Gene omics information

Query gene ID	PtpAffx.92745.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	80.5	PtpAffx.92745.1.S1_at	CK104111	hypothetical protein	-	4e-22	At1g73670	ATMPK15	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.30445.2.S1_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.30445.2.S1_a_at	CV275763	hypothetical protein	-	2e-32	At3g18040	MPK9 (MAP KINASE 9)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.213932.1.S1_at	pmrna27162	hypothetical protein	-	5e-41	At3g47600	ATMYB94 (MYB DOMAIN PROTEIN 94)	S.X.	H.G.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.152452.2.A1_a_at	CV269086	hypothetical protein	-	4e-1	At1g53903	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.219737.1.S1_s_at	pmrna35759	hypothetical protein	-	4e-41	At3g09600	myb family transcription factor	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	98.8	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
5.5	97.1	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.9	96.5	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.5	96.1	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
4.4	95.9	GSM328070	Populus x canescens leaf control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.2	93.5	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	7e-6	52	PtpAffx.147925.1.S1_at	DN494917	hypothetical protein	-	3e-29	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-3	44	PtpAffx.208519.1.S1_at	pmrna16903	hypothetical protein	-	0	At5g19010	MPK16	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-1	38	PtpAffx.89081.1.A1_at	CV239861	-	-	1e+0	At3g58450	universal stress protein (USP) family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.203338.1.S1_at	pmrna6643	hypothetical protein	-	3e-2	At3g47110	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e+0	32	PtpAffx.41158.2.S1_at	CV240764	hypothetical protein	-	1e-16	At3g45640	ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.220113.1.S1_at	pmrna36447	hypothetical protein	-	7e-3	At5g67190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	7e+0	32	PtpAffx.217889.1.S1_at	pmrna33337	hypothetical protein	-	9e-1	At5g15550	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.214798.1.S1_at	pmrna28649	hypothetical protein	-	2e+0	At2g22720	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	7e+0	32	PtpAffx.205226.1.S1_at	pmrna10360	hypothetical protein	-	9e-3	At5g49520	WRKY48	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	4e-22	105	Arabidopsis thaliana	At1g73670	843702	ATMPK15	member of MAP Kinase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	PsAffx.C80000021_at	PsAffx.C80000021	-	-	4e+0	At2g25230	MYB100 (myb domain protein 100)	C.G.	S.X.	Please select
0.04	9e+0	30	Hordeum vulgare	rbags18j12_s_at	rbags18j12	-	-	3e-6	At1g65980	TPX1 (thioredoxin-dependent peroxidase 1)	C.G.	S.X.	Please select
0.10	1e-11	71	Oryza sativa	Os06g0708000	AF194415.1	-	MAP kinase homolog	1e-68	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	6e-9	61	Triticum aestivum	Ta.6053.1.S1_at	CA687955	Mitogen-activated protein kinase MAPK1	-	2e-45	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622574_at	CF568861	hypothetical protein LOC100241704	-	6e-2	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	C.G.	S.X.	Please select
0.06	5e-1	34	Zea mays	Zm.13720.1.S1_s_at	AY106348.1	MPK17-2 - putative MAPK	-	1e-18	At3g18040	MPK9 (MAP KINASE 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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