CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.92049.1.S1_s_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.92049.1.S1_s_at DN494710 hypothetical protein - 3e-7 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) S.X. H.G.
0.80 96.0 PtpAffx.200540.1.S1_s_at pmrna1075 hypothetical protein - 2e-6 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) S.X. H.G.
0.63 88.1 PtpAffx.200541.1.S1_s_at pmrna1076 hypothetical protein - 3e-1 At4g17170 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) S.X. H.G.
0.61 87.0 PtpAffx.208897.1.S1_at pmrna17648 hypothetical protein - 1e+0 At4g35360 pantothenate kinase family protein S.X. H.G.
0.60 86.0 PtpAffx.67985.1.S1_at BP933020 - - 8e-1 At2g21810 CHP-rich zinc finger protein, putative S.X. H.G.
0.36 61.6 PtpAffx.22767.1.S1_a_at DN487906 hypothetical protein - 8e+0 At5g27940 WPP3 (WPP domain protein 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.9 99.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
25.7 99.9 GSM327281 Populus balsamifera_20071015_Seedling_continuous_light_6d_1 GSE13990 Populus balsamifera developmental tissue series
9.1 98.7 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.4 97.7 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
5.5 97.1 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.3 93.7 GSM327359 Populus balsamifera_20071015_Seedling_continuous_light_6d_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
1.2 79.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.69 0 1047 PtpAffx.200540.1.S1_s_at pmrna1075 hypothetical protein - 2e-6 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.45 0 858 PtpAffx.200539.1.S1_at pmrna1074 hypothetical protein - 1e-5 At3g09260 PYK10 C.G. S.X.
0.54 6e-93 341 PtpAffx.216821.1.S1_s_at pmrna31856 hypothetical protein - 3e-8 At1g66280 BGLU22 C.G. S.X.
0.60 7e-74 278 PtpAffx.55714.1.S1_s_at CX177745 hypothetical protein - 9e-5 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.37 2e-31 137 PtpAffx.204078.1.S1_s_at pmrna8052 hypothetical protein - 4e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.37 2e-31 137 PtpAffx.204078.1.S1_at pmrna8052 hypothetical protein - 4e-5 At5g42260 BGLU12 (BETA GLUCOSIDASE 12) C.G. S.X.
0.16 1e-10 67 PtpAffx.200552.1.S1_at pmrna1095 hypothetical protein - 3e-3 At5g24550 BGLU32 (BETA GLUCOSIDASE 32) C.G. S.X.
0.15 2e-6 54 PtpAffx.200551.1.S1_at pmrna1094 hypothetical protein - 5e-8 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) C.G. S.X.
0.11 3e-5 50 PtpAffx.222817.1.S1_s_at pmrna40485 hypothetical protein - 5e+0 At5g60680 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 3e-7 56 Arabidopsis thaliana At5g54570 835545 BGLU41 (BETA GLUCOSIDASE 41) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA - - - C.G. S.X.
0.09 1e-1 38 Glycine max GmaAffx.74120.1.S1_at BI945865 - - 2e-11 At1g61810 BGLU45 (BETA-GLUCOSIDASE 45) C.G. S.X.
0.05 2e+0 32 Hordeum vulgare S0000800160B06F1_at S0000800160B06F1 - - 1e-2 At4g40040 histone H3.2 C.G. S.X.
0.07 3e-9 63 Oryza sativa Os06g0683300 AK068614.1 - Beta-glucosidase 1e-10 At5g54570 BGLU41 (BETA GLUCOSIDASE 41) C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.53652.1.S1_at CA690391 - - 1e+1 At3g56610 unknown protein C.G. S.X.
0.12 4e-4 44 Vitis vinifera 1622281_at CD715637 hypothetical LOC100250160 - 2e-11 At2g44450 BGLU15 (BETA GLUCOSIDASE 15) C.G. S.X.
0.04 6e-4 44 Zea mays Zm.17234.1.S1_at CK145263 hypothetical protein LOC100192939 - 2e-4 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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