Gene omics information

Query gene ID	PtpAffx.91700.2.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	88.1	PtpAffx.91700.2.S1_at	CV273319	hypothetical protein	-	1e-19	At4g38470	protein kinase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.90	97.9	PtpAffx.18976.1.A1_at	CV226921	hypothetical protein	-	1e+1	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.88	97.7	PtpAffx.24159.1.A1_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.88	97.7	PtpAffx.24159.1.A1_x_at	CA923426	hypothetical protein	-	9e-3	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	S.X.	H.G.	Please selecteFP Browser (expression)
0.87	97.5	PtpAffx.128798.1.S1_at	CN520667	hypothetical protein	-	2e-15	At5g41080	glycerophosphoryl diester phosphodiesterase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.85	97.2	PtpAffx.6273.1.S1_at	CV264184	-	-	1e+1	At5g05910	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.85	97.2	PtpAffx.210801.1.S1_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.85	97.2	PtpAffx.210801.1.S1_x_at	pmrna21209	hypothetical protein	-	4e+0	At5g05770	WOX7 (WUSCHEL-RELATED HOMEOBOX 7)	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.2386.3.S1_at	CV274142	hypothetical protein	-	2e+0	At4g03150	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.25648.2.A1_at	CV230643	hypothetical protein	-	6e-14	At4g02280	SUS3 (sucrose synthase 3)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.1	100.0	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
37.5	100.0	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.4	97.7	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.5	96.1	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.1	95.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
0.0	33.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	0	720	PtpAffx.91700.1.S1_a_at	BU895299	hypothetical protein	-	4e-57	At4g38470	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.27	3e-126	452	Ptp.6313.1.S1_s_at	CV267576	-	-	1e-83	At4g38470	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.41	5e-100	365	PtpAffx.30032.2.S1_at	CX177019	-	-	3e-4	At4g38470	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	2e-13	77	PtpAffx.49251.1.A1_at	CX175939	hypothetical protein	-	4e-29	At4g38470	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.13	7e-13	75	PtpAffx.18569.1.A1_at	CV242271	-	-	3e-10	At4g35780	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.18	7e-13	75	Ptp.3338.1.S1_s_at	CV261671	hypothetical protein	-	4e-54	At4g35780	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.07	4e-5	50	PtpAffx.43679.1.A1_at	CV262001	-	-	1e-6	At4g35780	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	6e-4	46	PtpAffx.201808.1.S1_at	pmrna3604	hypothetical protein	-	2e-4	At2g17700	protein kinase family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	9e-3	42	PtpAffx.208799.1.S1_at	pmrna17443	hypothetical protein	-	9e-60	At3g06030	ANP3 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 3)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-19	97	Arabidopsis thaliana	At4g38470	830003	protein kinase family protein	F:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation, metabolic process;C:cytosol;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	9e-40	165	Glycine max	GmaAffx.19954.1.A1_at	AW349340	-	-	5e-34	At4g38470	protein kinase family protein	C.G.	S.X.	Please select
0.15	6e-11	67	Hordeum vulgare	Contig5056_s_at	Contig5056	-	-	1e-1	At4g38470	protein kinase family protein	C.G.	S.X.	Please select
0.10	1e-14	81	Oryza sativa	Os09g0544300	AK072690.1	-	Amino acid-binding ACT domain containing protein	2e-33	At4g38470	protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	3e-14	79	Triticum aestivum	Ta.20406.2.S1_at	BQ800752	-	-	5e-15	At4g38470	protein kinase family protein	C.G.	S.X.	Please select
0.24	1e-44	178	Vitis vinifera	1613252_at	BQ794813	hypothetical protein LOC100246860	-	1e-91	At4g38470	protein kinase family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zea mays	Zm.1085.2.A1_a_at	BQ619399	photosystem I reaction center subunit V /// photosystem I reaction center subunit V	-	1e-8	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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