CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.9076.1.A1_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 PtpAffx.9076.1.A1_at CV252324 hypothetical protein - 1e-30 At2g43070 protease-associated (PA) domain-containing protein S.X. H.G.
0.50 78.6 Ptp.4967.1.A1_at CV228163 hypothetical protein - 2e-20 At5g51430 EYE (EMBRYO YELLOW) S.X. H.G.
0.40 67.0 PtpAffx.44174.1.A1_at CV242420 hypothetical protein - 2e-8 At5g05987 PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) S.X. H.G.
0.36 61.6 PtpAffx.98987.1.S1_s_at DN500449 hypothetical protein - 1e+0 At5g16453 - S.X. H.G.
0.33 57.5 PtpAffx.123212.1.S1_at CF236190 hypothetical protein - 5e-34 At4g01400 - S.X. H.G.
0.17 29.1 Ptp.273.1.S1_at CK087938 hypothetical protein - 2e-24 At3g42050 vacuolar ATP synthase subunit H family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.8 94.9 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM328070 Populus x canescens leaf control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.6 91.3 GSM328059 Populus x canescens leaf control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.3 89.8 GSM328063 Populus x canescens leaf control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328274 Populus x canescens leaf hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 5e-58 226 PtpAffx.9076.2.S1_at BU809324 hypothetical protein - 2e-3 At1g05820 aspartic-type endopeptidase/ peptidase C.G. S.X.
0.22 1e-55 218 PtpAffx.9076.3.A1_at DN487549 hypothetical protein - 5e+0 At1g17147 - C.G. S.X.
0.02 6e-2 40 PtpAffx.202220.1.S1_at pmrna4443 hypothetical protein - 1e-61 At1g01650 aspartic-type endopeptidase/ peptidase C.G. S.X.
0.02 1e+0 36 PtpAffx.223391.1.S1_s_at pmrna41369 - - 6e-16 At4g21100 DDB1B (Damaged DNA Binding Protein 1 B) C.G. S.X.
0.01 1e+0 36 PtpAffx.209831.1.S1_at pmrna19387 hypothetical protein - 2e-24 At4g21100 DDB1B (Damaged DNA Binding Protein 1 B) C.G. S.X.
0.02 1e+0 36 PtpAffx.203380.1.S1_at pmrna6724 hypothetical protein - 4e+0 At5g43000 unknown protein C.G. S.X.
0.01 1e+0 36 Ptp.1944.1.S1_at BU815410 hypothetical protein - 5e-2 At5g59540 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.01 1e+0 36 Ptp.1944.1.S1_s_at BU815410 hypothetical protein - 5e-2 At5g59540 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.01 4e+0 34 PtpAffx.8185.1.S1_at CK087352 hypothetical protein - 5e-4 At4g17010 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-30 135 Arabidopsis thaliana At2g43070 818909 protease-associated (PA) domain-containing protein F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBFA - - - C.G. S.X.
0.34 7e-48 192 Glycine max GmaAffx.55210.2.S1_at BE330623 - - 3e-32 At2g43070 protease-associated (PA) domain-containing protein C.G. S.X.
0.21 1e-25 117 Hordeum vulgare Contig11156_at Contig11156 - - 2e-10 At2g43070 protease-associated (PA) domain-containing protein C.G. S.X.
0.08 6e-9 63 Oryza sativa Os11g0433200 AK067867.1 - Peptidase A22B, minor histocompatibility antigenH13 family protein 5e-3 At1g01650 aspartic-type endopeptidase/ peptidase C.G. S.X.
0.14 8e-10 65 Triticum aestivum Ta.13399.1.S1_a_at CK195532 - - 1e-14 At2g43070 protease-associated (PA) domain-containing protein C.G. S.X.
0.14 7e-23 107 Vitis vinifera 1619701_at BM437347 hypothetical protein LOC100249763 - 1e-3 At2g43070 protease-associated (PA) domain-containing protein C.G. S.X.
0.02 8e-2 38 Zea mays Zm.4826.1.A1_at AY107837.1 signal peptide peptidase-like 2B - 7e-13 At1g63690 protease-associated (PA) domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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