CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.90746.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 73.7 PtpAffx.90746.1.A1_at CK094582 - - 1e+1 At3g02640 unknown protein S.X. H.G.
0.44 71.9 PtpAffx.67478.1.S1_at BU893248 - - 2e+0 At2g35090 unknown protein S.X. H.G.
0.27 47.1 PtpAffx.221666.1.S1_at pmrna38666 hypothetical protein - 2e+0 At3g49890 unknown protein S.X. H.G.
0.17 29.1 PtpAffx.205814.1.S1_at pmrna11500 hypothetical protein - 2e-1 At5g23140 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) S.X. H.G.
0.06 9.8 PtpAffx.215289.1.S1_s_at pmrna29383 - - 1e-1 At5g51860 MADS-box protein (AGL72) S.X. H.G.
0.05 8.3 PtpAffx.201140.1.S1_at pmrna2240 hypothetical protein - 1e-1 At1g03670 ankyrin repeat family protein S.X. H.G.
0.03 5.2 Ptp.7508.1.S1_at CK109400 - - 4e+0 At2g16668 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
11.7 99.2 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
9.9 98.9 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
8.9 98.7 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.1 96.8 GSM372095 Clone3200_LPI5_N-_4w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.0 96.6 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
4.5 96.1 GSM372096 Clone3200_LPI5_N-_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3 95.8 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM372094 Clone3200_LPI5_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.2 95.6 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2 93.5 GSM328062 Populus x canescens leaf control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 34 Ptp.5842.2.A1_s_at CV268223 - - 2e-9 At2g47900 AtTLP3 (TUBBY LIKE PROTEIN 3) C.G. S.X.
0.02 3e+0 32 PtpAffx.18316.1.A1_at CV253468 hypothetical protein - 5e-11 At1g68570 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.03 3e+0 32 PtpAffx.140057.1.A1_at CV274295 f-box family protein - 5e+0 At4g21040 Dof-type zinc finger domain-containing protein C.G. S.X.
0.02 3e+0 32 Ptp.6344.1.S1_at BU824671 hypothetical protein - 3e-2 At5g63460 SAP domain-containing protein C.G. S.X.
0.04 1e+1 30 PtpAffx.85937.1.A1_s_at CV229820 hypothetical protein - 5e-2 At5g03995 unknown protein C.G. S.X.
0.03 1e+1 30 PtpAffx.40269.1.S1_at CK097693 - - 6e+0 At4g00500 lipase class 3 family protein / calmodulin-binding heat-shock protein-related C.G. S.X.
0.02 1e+1 30 PtpAffx.224410.1.S1_at pmrna42909 hypothetical protein - 3e-3 At4g34480 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds C.G. S.X.
0.01 1e+1 30 PtpAffx.224233.1.S1_s_at pmrna42601 amino acid permease - 8e-17 At5g09220 AAP2 (AMINO ACID PERMEASE 2) C.G. S.X.
0.02 1e+1 30 PtpAffx.208311.1.S1_s_at pmrna16530 hypothetical protein - 4e-3 At1g27200 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+1 30 Arabidopsis thaliana At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO - - - C.G. S.X.
0.04 3e+0 32 Glycine max GmaAffx.54325.1.S1_at AW350647 - - 1e-6 At1g76065 - C.G. S.X.
0.06 5e+0 30 Hordeum vulgare EBem05_SQ003_C02_at EBem05_SQ003_C02 - - 4e+0 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.04 2e+1 30 Oryza sativa Os12g0547000 9640.m03491 - - 4e+0 At2g37530 unknown protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.28146.1.S1_at CA664568 - - 2e+1 At3g12345 unknown protein C.G. S.X.
0.03 1e+1 28 Vitis vinifera 1620734_at CD799694 hypothetical protein LOC100246175 - 4e+0 At4g03827 unknown protein C.G. S.X.
0.03 2e+1 28 Zea mays Zm.3876.1.S1_at AY111960.1 hypothetical protein LOC100278092 - 5e+0 At4g17030 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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