Gene omics information

Query gene ID	PtpAffx.8895.1.S1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	78.6	PtpAffx.8895.1.S1_at	CV267481	hypothetical protein	-	7e-1	At4g10596	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.80513.1.S1_at	CV277326	hypothetical protein	-	5e-8	At3g51550	FER (FERONIA)	S.X.	H.G.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.12232.1.A1_a_at	CV264320	hypothetical protein	-	1e-4	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.204485.1.S1_s_at	pmrna8801	hypothetical protein	-	2e-6	At1g08280	glycosyl transferase family 29 protein / sialyltransferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.216395.1.S1_x_at	pmrna31153	hypothetical protein	-	7e-16	At1g73300	scpl2 (serine carboxypeptidase-like 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.11	18.1	PtpAffx.57191.1.A1_at	CV276610	hypothetical protein	-	8e+0	At5g25020	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	98.1	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
6.8	98.0	GSM372097	Clone3200_LPI5_N-_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.5	97.1	GSM372094	Clone3200_LPI5_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
5.3	96.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.9	96.5	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.4	95.9	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.3	95.8	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
4.1	95.5	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM372044	Clone1979_LPI5_N+_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM372045	Clone1979_LPI5_N+_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-163	577	Ptp.6562.1.S1_at	CK093623	-	-	2e+0	At5g56840	DNA-binding family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	3e-7	57	PtpAffx.224927.1.S1_at	pmrna43857	hypothetical protein	-	1e-1	At3g52060	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-5	52	PtpAffx.224930.1.S1_at	pmrna43861	hypothetical protein	-	2e+0	At4g22700	LBD32 (LOB DOMAIN-CONTAINING PROTEIN 32)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	7e-5	50	PtpAffx.212118.1.S1_at	pmrna23765	hypothetical protein	-	2e+0	At4g40011	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	1e-3	46	PtpAffx.224572.1.S1_at	pmrna43225	hypothetical protein	-	3e-6	At4g37050	PLP4 (PATATIN-LIKE PROTEIN 4)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-2	42	PtpAffx.224265.1.S1_s_at	pmrna42669	hypothetical protein	-	5e-4	At2g26560	PLA2A (PHOSPHOLIPASE A 2A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	2e-2	42	PtpAffx.224265.1.S1_at	pmrna42669	hypothetical protein	-	5e-4	At2g26560	PLA2A (PHOSPHOLIPASE A 2A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e-2	42	PtpAffx.212122.1.S1_at	pmrna23773	hypothetical protein	-	1e-1	At1g23350	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	1e+0	36	PtpAffx.219032.1.S1_at	pmrna34824	hypothetical protein	-	4e-2	At2g02240	MEE66 (maternal effect embryo arrest 66)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	At4g10596	6240706	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.15816.1.A1_at	CD409822	-	-	4e+0	At3g13882	structural constituent of ribosome	C.G.	S.X.	Please select
0.02	2e-2	40	Hordeum vulgare	Contig5186_at	Contig5186	-	-	1e-25	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select
0.03	1e+0	36	Oryza sativa	Os01g0898500	AK106563.1	-	Patatin-like protein 2 (Fragment)	8e-1	At2g26560	PLA2A (PHOSPHOLIPASE A 2A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	7e-1	36	Triticum aestivum	TaAffx.108425.1.S1_at	CA688476	-	-	3e+0	At5g27200	ACP5 (acyl carrier protein 5)	C.G.	S.X.	Please select
0.02	1e-2	40	Vitis vinifera	1618985_at	CF207547	-	-	4e+0	At4g39580	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zea mays	Zm.4940.2.S1_a_at	AI979640	-	-	2e-21	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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