CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.88808.1.A1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 91.1 PtpAffx.88808.1.A1_at CV251825 - - 5e+0 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) S.X. H.G.
0.55 82.2 PtpAffx.8880.1.S1_at CV278627 hypothetical protein - 3e-31 At3g10410 scpl49 (serine carboxypeptidase-like 49) S.X. H.G.
0.46 73.7 Ptp.7487.1.S1_at DN485745 hypothetical protein - 6e-19 At2g41960 unknown protein S.X. H.G.
0.38 63.7 Ptp.2962.1.A1_a_at CV262692 hypothetical protein - 8e-16 At5g19070 - S.X. H.G.
0.31 53.7 Ptp.5434.1.A1_at CV264344 hypothetical protein - 6e-32 At4g29330 DER1 (DERLIN-1) S.X. H.G.
0.29 50.5 Ptp.2472.1.A1_s_at CV270276 hypothetical protein - 1e-54 At1g54290 eukaryotic translation initiation factor SUI1, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.9 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.8 94.9 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.0 92.9 GSM327358 Populus balsamifera_20071015_Seedling_continuous_light_6d_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM327380 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327400 Populus balsamifera_20071015_Etiolated_seedling_6d_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM372097 Clone3200_LPI5_N-_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1 88.6 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 PtpAffx.75526.1.S1_at CV257957 hypothetical protein - 1e-54 At5g07290 AML4 (ARABIDOPSIS MEI2-LIKE 4) C.G. S.X.
0.02 2e+0 34 PtpAffx.7589.1.S1_s_at BU809171 hypothetical protein - 3e-58 At1g68750 ATPPC4 C.G. S.X.
0.02 2e+0 34 PtpAffx.215509.1.S1_at pmrna29747 hypothetical protein - 2e+0 At3g01472 CPuORF33 (Conserved peptide upstream open reading frame 33) C.G. S.X.
0.02 2e+0 34 PtpAffx.207983.1.S1_at pmrna15848 hypothetical protein - 6e-82 At1g68750 ATPPC4 C.G. S.X.
0.02 2e+0 34 PtpAffx.158812.1.S1_s_at CX182269 hypothetical protein - 4e-1 At3g06520 agenet domain-containing protein C.G. S.X.
0.02 2e+0 34 Ptp.7229.1.S1_at CV245078 f-box family protein - 6e-1 At4g33160 ubiquitin-protein ligase C.G. S.X.
0.02 6e+0 32 PtpAffx.53274.1.A1_at DN492233 hypothetical protein - 3e-6 At2g04020 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.01 6e+0 32 PtpAffx.34823.1.S1_at CK103514 hypothetical protein - 3e-25 At1g71790 F-actin capping protein beta subunit family protein C.G. S.X.
0.01 6e+0 32 PtpAffx.213630.1.S1_s_at pmrna26623 hypothetical protein - 1e-4 At5g05570 transducin family protein / WD-40 repeat family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At2g44840 819093 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. - - - C.G. S.X.
0.11 3e-8 59 Glycine max GmaAffx.25406.1.S1_at BE657604 - - 6e-2 At5g52750 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig3156_s_at Contig3156 - - 5e-2 At5g39190 GER2 (GERMIN-LIKE PROTEIN 2) C.G. S.X.
0.03 9e+0 32 Oryza sativa Os09g0521700 AK064507.1 - Hypothetical protein 2e+0 At5g22080 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.80866.1.S1_at CA691710 - - 4e+0 At4g28280 unknown protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1612447_at CF515627 - - 3e+0 At5g48657 defense protein-related C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.452.1.A1_at AI677152 - - 3e-6 At3g03380 DegP7 (DegP protease 7) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage