Gene omics information

Query gene ID	PtpAffx.88652.1.A1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	91.1	PtpAffx.88652.1.A1_at	CV257803	-	-	2e+0	At1g79650	RAD23	S.X.	H.G.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.249.197.A1_a_at	CV262428	hypothetical protein	-	2e-35	At5g04740	ACT domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.113221.1.S1_s_at	CV267923	hypothetical protein	-	2e-7	At5g38640	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.11668.1.A1_at	CV257312	hypothetical protein	-	2e-18	At1g23860	RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21)	S.X.	H.G.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.200356.1.S1_at	pmrna714	hypothetical protein	-	1e-21	At5g10560	glycosyl hydrolase family 3 protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.203291.1.S1_at	pmrna6522	hypothetical protein	-	1e-13	At4g11110	SPA2 (SPA1-RELATED 2)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.3	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
4.5	96.1	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.8	94.9	GSM244441	Mixed infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.7	94.7	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.5	94.3	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.7	91.8	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	0	866	PtpAffx.221349.1.S1_at	pmrna38192	hypothetical protein	-	7e-10	At1g33680	RNA binding / nucleic acid binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.44	2e-56	220	PtpAffx.70808.1.S1_at	CK096612	hypothetical protein	-	1e-1	At1g48920	ATNUC-L1	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	5e-1	36	PtpAffx.40510.1.S1_at	DN491913	hypothetical protein	-	3e+0	At5g05420	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	5e-1	36	PtpAffx.10532.1.S1_a_at	CV237901	-	-	6e-45	At2g24280	serine carboxypeptidase S28 family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.209998.1.S1_at	pmrna19722	cyclic nucleotide-gated channel	-	1e-2	At5g26751	ATSK11	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.207499.1.S1_at	pmrna14890	hypothetical protein	-	1e-7	At1g73080	PEPR1 (PEP1 receptor 1)	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	Ptp.2983.1.S1_at	BU833852	-	-	3e+0	At3g24270	APUM25 (Arabidopsis Pumilio 25)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.82154.1.A1_s_at	CV258446	hypothetical protein	-	9e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.82154.1.A1_at	CV258446	hypothetical protein	-	9e-2	At3g12360	ITN1 (INCREASED TOLERANCE TO NACL)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At1g79650	844304	RAD23	putative DNA repair protein RAD23	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e+0	34	Glycine max	Gma.10945.1.S1_a_at	CD418126	-	-	1e-2	At1g33680	RNA binding / nucleic acid binding	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEm0007C24r2_at	HVSMEm0007C24r2	-	-	3e+0	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select
0.02	1e+1	32	Oryza sativa	OsAffx.11634.2.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	TaAffx.23420.1.S1_at	CA734871	-	-	2e-1	At4g25150	acid phosphatase, putative	C.G.	S.X.	Please select
0.15	4e-20	97	Vitis vinifera	1620825_s_at	CB972353	hypothetical protein LOC100253453	-	1e-2	At1g33680	RNA binding / nucleic acid binding	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.812.1.A1_at	AI770420	-	-	8e-4	At1g49730	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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