Gene omics information

Query gene ID	PtpAffx.87019.1.A1_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.51	78.9	PtpAffx.87019.1.A1_at	BP935009	hypothetical protein	-	9e-14	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.135582.1.A1_at	CV271788	hypothetical protein	-	2e+0	At1g76630	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.7536.3.A1_at	CV227608	-	-	5e+0	At5g35526	unknown protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.20182.2.S1_at	CV261841	-	-	6e-3	At3g06660	PAPA-1-like family protein / zinc finger (HIT type) family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.54182.1.A1_at	CV249623	-	-	4e-16	At5g42970	COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8)	S.X.	H.G.	Please selecteFP Browser (expression)
0.46	73.7	Ptp.5410.1.S1_at	CV249787	hypothetical protein	-	2e-9	At5g16450	dimethylmenaquinone methyltransferase family protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.19715.1.A1_at	CV263893	hypothetical protein	-	7e-10	At2g20230	-	S.X.	H.G.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.196.1.S1_at	CV228371	hypothetical protein	-	1e-91	At1g79230	MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1)	S.X.	H.G.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.56124.1.A1_at	CV277086	SET domain protein /// SET domain protein	-	4e-38	At1g05830	ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.1608.1.A1_at	CV229340	hypothetical protein	-	9e-16	At2g46920	POL (poltergeist)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.5	99.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
11.1	99.1	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
7.6	98.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.6	97.9	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.7	96.3	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM362884	Clone1979_LPI2_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.1	88.6	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.0	88.0	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.5	83.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	2e-111	402	Ptp.3707.1.S1_at	BU884541	hypothetical protein	-	8e-5	At5g12150	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.19	3e-110	398	PtpAffx.204812.1.S1_at	pmrna9487	hypothetical protein	-	3e-63	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.48	3e-79	295	PtpAffx.11660.1.A1_at	CV257656	hypothetical protein	-	6e-6	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	7e-3	42	PtpAffx.209598.1.S1_at	pmrna18983	hypothetical protein	-	3e-1	At5g12300	C2 domain-containing protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	3e-2	40	PtpAffx.200799.1.S1_at	pmrna1557	hypothetical protein	-	6e-53	At5g59960	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.224988.1.S1_at	pmrna43955	hypothetical protein	-	3e-11	At3g47090	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.213002.1.S1_at	pmrna25425	-	-	2e-28	At4g19900	glycosyl transferase-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	2e+0	34	PtpAffx.203028.1.S1_at	pmrna5994	hypothetical protein	-	1e-21	At4g17420	-	C.G.	S.X.	Please selecteFP Browser (expression)
0.03	2e+0	34	PtpAffx.12287.1.S1_s_at	CV232901	hypothetical protein	-	3e-7	At1g22550	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-14	77	Arabidopsis thaliana	At5g19390	832059	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	Encodes a protein with similarity to REN1, a Rho GTPase activating protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-14	79	Glycine max	Gma.7501.1.A1_at	BU548144	-	-	4e-4	At5g19390	pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein	C.G.	S.X.	Please select
0.02	6e-1	34	Hordeum vulgare	Contig2379_s_at	Contig2379	-	-	2e-8	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	Os02g0542200	CA760509	-	FAR1 domain containing protein	1e+0	At3g13224	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-7	56	Triticum aestivum	Ta.9086.1.S1_at	CD866759	-	-	2e+0	At2g44940	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.03	9e-2	36	Vitis vinifera	1619881_at	CF201667.1	-	-	5e+0	At5g48860	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.8157.1.A1_at	BM073110	-	-	1e+0	At5g16870	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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