Gene omics information

Query gene ID	PtpAffx.8652.1.S1_at
Gene name
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	94.9	PtpAffx.8652.1.S1_at	CV234413	-	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.249.3.S1_x_at	AY594299.1	-	-	2e-11	At3g15353	MT3 (METALLOTHIONEIN 3)	S.X.	H.G.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.249.350.A1_at	BU876410	-	-	2e-10	At3g05880	RCI2A (RARE-COLD-INDUCIBLE 2A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.11401.5.A1_at	CV280789	hypothetical protein	-	2e+0	At1g59590	ZCF37	S.X.	H.G.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.222686.1.S1_at	pmrna40247	hypothetical protein	-	1e-20	At3g04610	FLK (flowering locus KH domain)	S.X.	H.G.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.201261.1.S1_at	pmrna2498	hypothetical protein	-	7e-14	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.2	98.1	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
4.0	95.3	GSM327400	Populus balsamifera_20071015_Etiolated_seedling_6d_1	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.4	94.0	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.3	93.7	GSM244440	Mixed infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.1	93.2	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM244433	Mlp infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
3.0	92.9	GSM327403	Populus balsamifera_20071015_Etiolated_seedling_6d_3	GSE13990	Populus balsamifera developmental tissue series

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	0	1766	Ptp.2558.1.S1_at	CK096344	hypothetical protein	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.54	0	1439	Ptp.4622.1.S1_s_at	BP930041	hypothetical protein	-	7e-93	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.31	0	666	PtpAffx.8652.2.S1_at	CA826343	hypothetical protein	-	3e-57	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	38	PtpAffx.203519.1.S1_at	pmrna6993	AP2 domain-containing transcription factor	-	2e-94	At1g51190	PLT2 (PLETHORA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	4e-1	38	PtpAffx.200171.1.S1_s_at	pmrna319	AP2 domain-containing transcription factor /// AP2 domain-containing transcription factor	-	1e-98	At1g51190	PLT2 (PLETHORA 2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	36	PtpAffx.219511.1.S1_at	pmrna35454	hypothetical protein	-	3e-1	At3g29590	AT5MAT	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	36	PtpAffx.219216.1.S1_at	pmrna35071	hypothetical protein	-	4e+0	At5g20447	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	36	PtpAffx.219216.1.S1_s_at	pmrna35071	hypothetical protein	-	4e+0	At5g20447	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	36	PtpAffx.201410.1.S1_at	pmrna2781	-	-	1e-1	At4g21630	subtilase family protein	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	0	1041	Arabidopsis thaliana	At1g78900	844228	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.60	0	973	Glycine max	Gma.1434.1.S1_at	AW349400	-	-	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select
0.33	2e-121	436	Hordeum vulgare	Contig2786_at	Contig2786	-	-	2e-147	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select
0.46	8e-133	476	Oryza sativa	Os06g0662000	AK071775.1	-	Vacuolar ATP synthase catalytic subunit A (EC3.6.3.14) (V-ATPase A subunit) (Vacuolar proton pumpalpha subunit) (V-ATPase 69 kDa subunit)	0	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	1e-108	395	Triticum aestivum	Ta.2650.1.S1_x_at	CK156172	vacuolar proton-ATPase subunit A	-	2e-141	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select
0.35	3e-159	561	Vitis vinifera	1606457_at	CB975875	hypothetical protein LOC100261512	-	3e-111	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select
0.43	4e-97	355	Zea mays	Zm.6945.1.A1_at	AY104754.1	vacuolar proton pump3	-	2e-101	At1g78900	VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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