Gene omics information

Query gene ID PtpAffx.86209.1.S1_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.86209.1.S1_atCV272652hypothetical protein-1e-7At5g66490unknown proteinS.X.H.G.
0.9199.2PtpAffx.225309.1.S1_s_atpmrna44567hypothetical protein-2e-1At5g39580peroxidase, putativeS.X.H.G.
0.7393.6PtpAffx.224549.1.S1_s_atpmrna43182hypothetical protein-8e-3At1g05250peroxidase, putativeS.X.H.G.
0.7393.6PtpAffx.7936.2.A1_atCV244968--8e-6At3g06350MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)S.X.H.G.
0.5784.2PtpAffx.68488.1.A1_atCV241159hypothetical protein-8e-2At2g43230serine/threonine protein kinase, putativeS.X.H.G.
0.4369.7Ptp.3277.1.S1_s_atDN498720hypothetical protein-1e-2At4g39830L-ascorbate oxidase, putativeS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
26.799.9GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
15.299.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
12.699.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
7.298.1GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
6.998.0GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplar
3.092.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.691.3GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplar
2.490.4GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
2.389.8GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.106e-22105PtpAffx.207373.1.S1_atpmrna14625hypothetical protein-1e-5At5g66490unknown proteinC.G.S.X.
0.041e-138PtpAffx.9451.1.A1_atCV245943hypothetical protein-3e+0At5g38060unknown proteinC.G.S.X.
0.022e+034PtpAffx.65112.2.S1_atCK094628hypothetical protein-2e-5At5g19640proton-dependent oligopeptide transport (POT) family proteinC.G.S.X.
0.032e+034PtpAffx.225565.1.S1_atpmrna44999hypothetical protein-8e-1At1g64480CBL8 (CALCINEURIN B-LIKE PROTEIN 8)C.G.S.X.
0.032e+034PtpAffx.224629.1.S1_s_atpmrna43350hypothetical protein-7e-5At2g29480ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2)C.G.S.X.
0.022e+034PtpAffx.207151.1.S1_atpmrna14185hypothetical protein-3e-6At2g19910RNA-dependent RNA polymerase family proteinC.G.S.X.
0.022e+034PtpAffx.206067.1.S1_atpmrna12025hypothetical protein-2e+0Atcg01060-C.G.S.X.
0.028e+032PtpAffx.91656.1.S1_atDN493318hypothetical protein-2e+0At4g01935unknown proteinC.G.S.X.
0.028e+032PtpAffx.83990.1.S1_atCK115317--7e-6Atcg01100-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.071e-757Arabidopsis thalianaAt5g66490836781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P---C.G.S.X.
0.032e+034Glycine maxHgAffx.18625.1.S1_atCA940555--9e-1At1g18400BEE1 (BR Enhanced Expression 1)C.G.S.X.
0.033e+032Hordeum vulgareEBro08_SQ007_I20_atEBro08_SQ007_I20--4e+0At5g19800hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.037e-136Oryza sativaOs08g05269009636.m04217--3e-1At5g12340unknown proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.85690.1.S1_atCA620522--4e+0At4g18040EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)C.G.S.X.
0.037e+030Vitis vinifera1620316_atCF606454--4e+0At5g15760plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeC.G.S.X.
0.031e+130Zea maysZm.6294.1.A1_atAI691294--3e+0At5g66550Maf family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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