CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.8582.1.S1_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 92.6 PtpAffx.8582.1.S1_at CV262556 - - 2e-1 At1g19310 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.80 96.0 PtpAffx.219974.1.S1_at pmrna36177 hypothetical protein - 2e-3 At2g45040 matrix metalloproteinase S.X. H.G.
0.50 78.6 PtpAffx.210555.1.S1_at pmrna20709 hypothetical protein - 4e-16 At1g23870 ATTPS9 S.X. H.G.
0.40 67.0 PtpAffx.213042.1.S1_at pmrna25523 hypothetical protein - 7e-15 At5g51780 basix helix-loop-helix (bHLH) family protein S.X. H.G.
0.40 67.0 PtpAffx.95587.1.A1_at CV240701 hypothetical protein - 1e+0 At5g53280 PDV1 (PLASTID DIVISION1) S.X. H.G.
0.23 40.5 PtpAffx.25308.1.S1_x_at CN550378 - - 4e+0 At5g20970 heat shock family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.0 99.7 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
15.7 99.6 GSM327408 Populus balsamifera_1006_root_midday_2 GSE13990 Populus balsamifera developmental tissue series
11.7 99.2 GSM327407 Populus balsamifera_1006_root_midday_1 GSE13990 Populus balsamifera developmental tissue series
10.2 99.0 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
9.3 98.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8 86.4 GSM244437 Mmd infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.7 85.5 GSM327397 Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM327403 Populus balsamifera_20071015_Etiolated_seedling_6d_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 4e-142 506 PtpAffx.8582.3.S1_a_at CX182191 hypothetical protein - 3e-11 At4g03510 RMA1 C.G. S.X.
0.33 6e-73 276 Ptp.5173.3.A1_at CV272887 - - 1e+0 At5g53830 VQ motif-containing protein C.G. S.X.
0.26 5e-58 226 Ptp.5173.2.S1_s_at CK112383 - - 3e-2 At4g03510 RMA1 C.G. S.X.
0.04 5e-9 63 PtpAffx.24507.1.A1_at CV268439 hypothetical protein - 1e-7 At4g27470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e-8 61 Ptp.7237.1.S1_at AY129244.1 hypothetical protein - 8e+0 At5g52360 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) C.G. S.X.
0.03 4e-3 44 PtpAffx.16305.1.S1_at DN501355 - - 2e-3 At4g27470 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 3e-1 38 PtpAffx.5070.1.A1_at CV273039 - - 6e-4 At2g18360 hydrolase, alpha/beta fold family protein C.G. S.X.
0.01 1e+0 36 PtpAffx.92678.1.S1_at CV265827 hypothetical protein - 2e-57 At1g76140 serine-type endopeptidase/ serine-type peptidase C.G. S.X.
0.01 1e+0 36 PtpAffx.45711.1.A1_at CV242673 hypothetical protein - 1e-1 At1g77930 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-1 38 Arabidopsis thaliana At1g19310 838513 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVB - - - C.G. S.X.
0.10 1e-15 85 Glycine max Gma.1968.1.S1_at AI416725 - - 5e-1 At4g03510 RMA1 C.G. S.X.
0.02 6e+0 32 Hordeum vulgare Contig5465_at Contig5465 - - 2e-4 At5g60460 sec61beta family protein C.G. S.X.
0.03 7e-9 63 Oryza sativa Os04g0530500 AK070732.1 - Zn-finger, RING domain containing protein 2e-1 At3g58030 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 2e-4 48 Triticum aestivum TaAffx.107606.1.A1_at CA737553 - - 7e+0 At5g43401 - C.G. S.X.
0.14 7e-23 107 Vitis vinifera 1615092_at CB349360 similar to ring domain containing protein - 1e-8 At4g03510 RMA1 C.G. S.X.
0.02 5e-3 42 Zea mays Zm.18115.1.A1_at CN845273 ring domain containing protein - 5e-1 At2g23780 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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