Gene omics information

Query gene ID PtpAffx.85797.1.S1_s_at
Gene name hypothetical protein
Organism Populus trichocarpa


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.2PtpAffx.85797.1.S1_s_atBU812872hypothetical protein-3e-1At1g01540protein kinase family proteinS.X.H.G.
0.4067.0Ptp.2927.2.S1_atDN499742tubulin gamma complex-associated protein /// tubulin gamma complex-associated protein-5e-47At5g06680SPC98 (SPINDLE POLE BODY COMPONENT 98)S.X.H.G.
0.1525.3Ptp.777.1.A1_atCV236864--7e+0At4g05530IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)S.X.H.G.
0.1321.6PtpAffx.109942.1.S1_s_atCN550009hypothetical protein-1e-4At1g01660U-box domain-containing proteinS.X.H.G.
0.1321.6Ptp.6370.3.S1_a_atCK091400hypothetical protein-6e+0At3g23635RTFL13 (ROTUNDIFOLIA LIKE 13)S.X.H.G.
0.035.2PtpAffx.212583.1.S1_atpmrna24652hypothetical protein-1e-10At5g24260prolyl oligopeptidase family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
13.099.4GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplar
7.598.3GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplar
6.497.7GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplar
5.997.4GSM328558Populus x canescens root control_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplar
5.196.8GSM328557Populus x canescens root control_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplar
4.095.3GSM328292Populus x canescens root control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplar
3.794.7GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplar
3.293.5GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.992.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.892.1GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplar
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.4401160PtpAffx.202219.1.S1_atpmrna4442hypothetical protein-8e-8At2g45910protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.042e-654PtpAffx.109942.1.S1_s_atCN550009hypothetical protein-1e-4At1g01660U-box domain-containing proteinC.G.S.X.
0.023e-240PtpAffx.201428.1.S1_atpmrna2821hypothetical protein-2e-6At1g33250fringe-related proteinC.G.S.X.
0.025e-136PtpAffx.222520.1.S1_x_atpmrna40017hypothetical protein-3e-6At2g28250NCRKC.G.S.X.
0.025e-136PtpAffx.222520.1.S1_s_atpmrna40017hypothetical protein-3e-6At2g28250NCRKC.G.S.X.
0.022e+034PtpAffx.50062.1.A1_atCV280584hypothetical protein-2e-127At2g31970RAD50C.G.S.X.
0.012e+034PtpAffx.211075.1.S1_atpmrna21758hypothetical protein-3e-125At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinC.G.S.X.
0.012e+034PtpAffx.203318.1.S1_atpmrna6598hypothetical protein-7e-32At4g10790UBX domain-containing proteinC.G.S.X.
0.012e+034Ptp.885.1.S1_s_atCV256904--2e-8At1g19397unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-136Arabidopsis thalianaAt1g01540839533protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA---C.G.S.X.
0.063e-550Glycine maxGmaAffx.53310.1.S1_atBG790507--1e-3At2g45910protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.044e-238Hordeum vulgareHT04L04r_atHT04L04r--3e+0At5g41330potassium channel tetramerisation domain-containing proteinC.G.S.X.
0.027e-136Oryza sativaOs.40799.1.S1_at---0C.G.S.X.
0.046e+032Triticum aestivumTaAffx.87067.1.S1_atCA596489--2e+1At5g48515-C.G.S.X.
0.071e-446Vitis vinifera1610925_atCF209806hypothetical protein LOC100267999-7e-8At3g49060protein kinase family protein / U-box domain-containing proteinC.G.S.X.
0.032e+032Zea maysZm.1387.1.S1_atAW927977pseudouridylate synthase-1e+0At3g17140invertase inhibitor-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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