Gene omics information

Query gene ID	PtpAffx.85760.1.S1_s_at
Gene name	hypothetical protein
Organism	Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.54	80.8	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please selecteFP Browser (expression)
0.84	97.1	PtpAffx.156707.1.S1_s_at	BU873655	hypothetical protein	-	4e-4	At2g03110	RNA binding / nucleic acid binding	S.X.	H.G.	Please selecteFP Browser (expression)
0.78	95.1	PtpAffx.120301.1.S1_s_at	CF235521	hypothetical protein	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	S.X.	H.G.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.132468.1.S1_s_at	DN498520	-	-	4e-1	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	S.X.	H.G.	Please selecteFP Browser (expression)
0.64	88.4	PtpAffx.134857.2.S1_at	CN523812	hypothetical protein	-	2e-24	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.61544.1.A1_at	CA931045	hypothetical protein	-	4e-19	At3g59380	FTA (FARNESYLTRANSFERASE A)	S.X.	H.G.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.3977.1.S1_s_at	CA821307	hypothetical protein	-	2e-18	At5g52040	ATRSP41	S.X.	H.G.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.134857.1.S1_at	CX185540	hypothetical protein	-	2e-43	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.163432.1.S1_s_at	BU812071	hypothetical protein	-	6e-58	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	S.X.	H.G.	Please selecteFP Browser (expression)

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	92.1	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328557	Populus x canescens root control_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.6	91.3	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	0	1009	PtpAffx.218468.1.S1_at	pmrna34094	hypothetical protein	-	0	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selecteFP Browser (expression)
0.08	3e-15	83	PtpAffx.3847.2.A1_at	BP935435	hypothetical protein	-	2e-159	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.04	1e-7	57	Ptp.1373.1.S1_s_at	CF235734	hypothetical protein	-	0	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.10	9e-6	52	PtpAffx.3847.4.A1_s_at	BU820394	hypothetical protein	-	2e-15	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.212440.1.S1_s_at	pmrna24376	hypothetical protein	-	4e-109	At2g43770	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	2e+0	34	PtpAffx.211484.1.S1_at	pmrna22506	hypothetical protein	-	7e-149	At2g45540	WD-40 repeat family protein / beige-related	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.3400.3.S1_at	DN492271	hypothetical protein	-	1e-10	At1g74450	unknown protein	C.G.	S.X.	Please selecteFP Browser (expression)
0.02	8e+0	32	PtpAffx.217303.1.S1_at	pmrna32505	hypothetical protein	-	5e+0	At4g19550	transcription regulator/ zinc ion binding	C.G.	S.X.	Please selecteFP Browser (expression)
0.01	8e+0	32	PtpAffx.206016.1.S1_at	pmrna11924	hypothetical protein	-	1e-9	At3g56860	UBP1 interacting protein 2a (UBA2a)	C.G.	S.X.	Please selecteFP Browser (expression)

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	6e-6	52	Arabidopsis thaliana	At3g25800	822171	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	one of three genes encoding the protein phosphatase 2A regulatory subunit	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-1	38	Glycine max	Gma.7498.3.S1_at	CA800433	-	-	4e-71	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please select
0.03	1e-2	40	Hordeum vulgare	HF24C10r_at	HF24C10r	-	-	1e+1	At5g53610	glycosyl hydrolase family protein 17	C.G.	S.X.	Please select
0.04	3e-3	44	Oryza sativa	Os09g0249700	AK069757.1	-	Protein phosphatase 2A A subunit (Phosphatase 2Aregulatory A subunit)	3e-87	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Triticum aestivum	Ta.16220.1.S1_at	CA602811	-	-	1e+1	At5g43380	TOPP6	C.G.	S.X.	Please select
0.39	2e-31	135	Vitis vinifera	1612881_at	BQ795786	-	-	4e-35	At1g25490	RCN1 (ROOTS CURL IN NPA)	C.G.	S.X.	Please select
0.02	1e-2	40	Zea mays	Zm.3442.1.A1_at	AY103732.1	hypothetical protein LOC100273117	-	9e-9	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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