CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PtpAffx.8523.2.S1_a_at

Gene name hypothetical protein

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 93.6 PtpAffx.8523.2.S1_a_at BI069505 hypothetical protein - 4e-32 At5g56530 unknown protein S.X. H.G.
0.60 86.0 PtpAffx.27667.1.S1_at DN491641 hypothetical protein - 2e+0 At1g07880 ATMPK13 S.X. H.G.
0.44 71.9 PtpAffx.207323.1.S1_s_at pmrna14519 hypothetical protein - 1e-21 At5g66600 unknown protein S.X. H.G.
0.43 69.7 PtpAffx.128165.1.A1_a_at CV241610 hypothetical protein - 1e+0 At1g76930 ATEXT4 (EXTENSIN 4) S.X. H.G.
0.25 43.6 PtpAffx.49441.1.A1_s_at CV236474 hypothetical protein - 5e-10 At5g63940 protein kinase family protein S.X. H.G.
0.14 23.5 PtpAffx.254.1.S1_s_at CV268035 hypothetical protein - 1e-20 At2g47115 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.3 97.7 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.3 96.9 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.1 96.8 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
5.0 96.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.3 95.8 GSM328557 Populus x canescens root control_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.8 94.9 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.98 0 1273 PtpAffx.8523.2.S1_at BI069505 hypothetical protein - 4e-32 At5g56530 unknown protein C.G. S.X.
0.36 3e-129 462 PtpAffx.8523.1.S1_at CV239620 hypothetical protein - 9e-106 At1g55360 unknown protein C.G. S.X.
0.02 1e-1 38 PtpAffx.214355.1.S1_at pmrna27918 hypothetical protein - 8e-84 At2g20050 ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase C.G. S.X.
0.01 1e-1 38 PtpAffx.210971.1.S1_at pmrna21552 hypothetical protein - 2e-37 At1g54490 XRN4 (EXORIBONUCLEASE 4) C.G. S.X.
0.03 1e-1 38 Ptp.3147.2.S1_a_at CV263867 hypothetical protein - 8e-8 At5g48440 oxidoreductase C.G. S.X.
0.02 5e-1 36 PtpAffx.984.1.S1_at CV258236 hypothetical protein - 3e+0 At4g31370 FLA5 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 5 PRECURSOR) C.G. S.X.
0.03 5e-1 36 PtpAffx.65172.2.S1_s_at CK091698 hypothetical protein - 1e+0 At1g67400 - C.G. S.X.
0.02 5e-1 36 PtpAffx.215963.1.S1_s_at pmrna30450 hypothetical protein - 5e-1 At1g11440 - C.G. S.X.
0.03 5e-1 36 PtpAffx.214141.1.S1_at pmrna27514 hypothetical protein - 5e-3 At2g22080 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-32 139 Arabidopsis thaliana At5g56530 835754 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFB - - - C.G. S.X.
0.18 2e-12 73 Glycine max GmaAffx.79727.1.S1_at AW203644 - - 1e-37 At3g13510 unknown protein C.G. S.X.
0.07 2e-1 36 Hordeum vulgare Contig5275_at Contig5275 - - 3e-22 At3g13510 unknown protein C.G. S.X.
0.07 8e-4 46 Oryza sativa OsAffx.13549.1.S1_at - - - 0 C.G. S.X.
0.03 4e-1 36 Triticum aestivum Ta.1874.1.A1_at BE446388 - - 2e-1 At3g02980 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.03 3e-2 38 Vitis vinifera 1613266_at CA815997 hypothetical protein LOC100250168 - 2e+0 At3g16690 nodulin MtN3 family protein C.G. S.X.
0.05 2e-1 36 Zea mays Zm.18312.1.S1_at CK827776 hypothetical protein LOC100279515 - 7e-17 At3g13510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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